dbCAN HGM

Cluster: HRGMv2_2807_CGC10

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_2807_18	HRGMv2_2807_18_24	23898	25652	-	2.A.58.2.2
pfam	HRGMv2_2807_18	HRGMv2_2807_18_25	25849	26325	+	Sm_multidrug_ex
pfam	HRGMv2_2807_18	HRGMv2_2807_18_26	26384	27070	-	RelA_SpoT
CAZyme	HRGMv2_2807_18	HRGMv2_2807_18_27	27264	28391	-	GT28
pfam	HRGMv2_2807_18	HRGMv2_2807_18_28	28366	28875	-	CrtO
STP	HRGMv2_2807_18	HRGMv2_2807_18_29	28872	29441	-	TetR_N
TC	HRGMv2_2807_18	HRGMv2_2807_18_30	29603	30709	-	9.A.23.1.1

Gene ID: HRGMv2_2807_18_24
Type: TC
Location: 23898 - 25652 (-)

Gene ID: HRGMv2_2807_18_25
Type: pfam
Location: 25849 - 26325 (+)

Gene ID: HRGMv2_2807_18_26
Type: pfam
Location: 26384 - 27070 (-)

Gene ID: HRGMv2_2807_18_27
Type: CAZyme
Location: 27264 - 28391 (-)

Gene ID: HRGMv2_2807_18_28
Type: pfam
Location: 28366 - 28875 (-)

Gene ID: HRGMv2_2807_18_29
Type: STP
Location: 28872 - 29441 (-)

Gene ID: HRGMv2_2807_18_30
Type: TC
Location: 29603 - 30709 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2807_18_27	vegetarian > omnivore	2.25112	0.00364
HRGMv2_2807_18_27	vegetarian > vegan	1.00867	0.00229
HRGMv2_2807_18_28	vegetarian > omnivore	2.52095	0.00364
HRGMv2_2807_18_29	vegetarian > omnivore	3.64746	0.00364