Cluster: HRGMv2_2807_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2807
- CGC Family ID: CGCFAM_10184
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2807_1 | HRGMv2_2807_1_202 | 195411 | 196133 | + | CE4 |
| pfam | HRGMv2_2807_1 | HRGMv2_2807_1_203 | 196191 | 196433 | - | SecG |
| TF | HRGMv2_2807_1 | HRGMv2_2807_1_204 | 196646 | 197284 | + | LexA_DNA_bind |
| TC | HRGMv2_2807_1 | HRGMv2_2807_1_205 | 197360 | 198955 | - | 3.A.1.5.11 |
| pfam | HRGMv2_2807_1 | HRGMv2_2807_1_206 | 198952 | 199764 | - | Cu-oxidase_4 |
| TC | HRGMv2_2807_1 | HRGMv2_2807_1_207 | 199833 | 202577 | - | 3.A.5.1.3 |
Gene ID: HRGMv2_2807_1_202
Type: CAZyme
Location: 195411 - 196133 (+)
Type: CAZyme
Location: 195411 - 196133 (+)
Gene ID: HRGMv2_2807_1_203
Type: pfam
Location: 196191 - 196433 (-)
Type: pfam
Location: 196191 - 196433 (-)
Gene ID: HRGMv2_2807_1_204
Type: TF
Location: 196646 - 197284 (+)
Type: TF
Location: 196646 - 197284 (+)
Gene ID: HRGMv2_2807_1_205
Type: TC
Location: 197360 - 198955 (-)
Type: TC
Location: 197360 - 198955 (-)
Gene ID: HRGMv2_2807_1_206
Type: pfam
Location: 198952 - 199764 (-)
Type: pfam
Location: 198952 - 199764 (-)
Gene ID: HRGMv2_2807_1_207
Type: TC
Location: 199833 - 202577 (-)
Type: TC
Location: 199833 - 202577 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp900545495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2807_1_202 | vegetarian > vegan | 1.11332 | 0.00229 |
| HRGMv2_2807_1_205 | vegetarian > omnivore | 2.82567 | 0.00364 |