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Cluster: HRGMv2_2788_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2788_1 HRGMv2_2788_1_539 578954 579934 - GT2
TF HRGMv2_2788_1 HRGMv2_2788_1_540 579937 580617 - 0037767
pfam HRGMv2_2788_1 HRGMv2_2788_1_541 580784 581812 + VitK2_biosynth | OpuAC | NMT1 | Phosphonate-bd | NMT1_2
TC HRGMv2_2788_1 HRGMv2_2788_1_542 581865 583139 - 2.A.26.1.9
pfam HRGMv2_2788_1 HRGMv2_2788_1_543 583329 584093 + BPD_transp_1
TC HRGMv2_2788_1 HRGMv2_2788_1_544 584093 584677 + 3.A.1.17.3
pfam HRGMv2_2788_1 HRGMv2_2788_1_545 584742 585824 - Radical_SAM | HemN_C
TC HRGMv2_2788_1 HRGMv2_2788_1_546 585937 586638 + 1.A.14.2.2
Gene ID: HRGMv2_2788_1_539
Type: CAZyme
Location: 578954 - 579934 (-)
Gene ID: HRGMv2_2788_1_540
Type: TF
Location: 579937 - 580617 (-)
Gene ID: HRGMv2_2788_1_541
Type: pfam
Location: 580784 - 581812 (+)
Gene ID: HRGMv2_2788_1_542
Type: TC
Location: 581865 - 583139 (-)
Gene ID: HRGMv2_2788_1_543
Type: pfam
Location: 583329 - 584093 (+)
Gene ID: HRGMv2_2788_1_544
Type: TC
Location: 584093 - 584677 (+)
Gene ID: HRGMv2_2788_1_545
Type: pfam
Location: 584742 - 585824 (-)
Gene ID: HRGMv2_2788_1_546
Type: TC
Location: 585937 - 586638 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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