Cluster: HRGMv2_2788_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2788
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2788_1 | HRGMv2_2788_1_296 | 309609 | 310754 | - | GH105 |
| CAZyme | HRGMv2_2788_1 | HRGMv2_2788_1_297 | 310760 | 312316 | - | GH28 |
| TF | HRGMv2_2788_1 | HRGMv2_2788_1_298 | 312434 | 313246 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_299 | 313436 | 314293 | - | 3.A.1.1.11 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_300 | 314305 | 315231 | - | 3.A.1.1.11 |
Gene ID: HRGMv2_2788_1_296
Type: CAZyme
Location: 309609 - 310754 (-)
Type: CAZyme
Location: 309609 - 310754 (-)
Gene ID: HRGMv2_2788_1_297
Type: CAZyme
Location: 310760 - 312316 (-)
Type: CAZyme
Location: 310760 - 312316 (-)
Gene ID: HRGMv2_2788_1_298
Type: TF
Location: 312434 - 313246 (+)
Type: TF
Location: 312434 - 313246 (+)
Gene ID: HRGMv2_2788_1_299
Type: TC
Location: 313436 - 314293 (-)
Type: TC
Location: 313436 - 314293 (-)
Gene ID: HRGMv2_2788_1_300
Type: TC
Location: 314305 - 315231 (-)
Type: TC
Location: 314305 - 315231 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_I
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.