Cluster: HRGMv2_2788_CGC26
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2788
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2226 | 2407116 | 2407682 | - | 2.A.51.1.6 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2227 | 2407688 | 2408281 | - | 2.A.51.1.6 |
| NULL(UNKNOWN) | HRGMv2_2788_1 | HRGMv2_2788_1_2228 | 2408586 | 2408960 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2229 | 2408974 | 2409948 | - | 3.A.1.5.19 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2230 | 2409938 | 2410966 | - | 3.A.1.5.2 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2231 | 2410979 | 2411908 | - | 3.A.1.5.2 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2232 | 2411923 | 2412882 | - | 3.A.1.5.19 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2233 | 2412997 | 2414769 | - | 3.A.1.5.18 |
| TF | HRGMv2_2788_1 | HRGMv2_2788_1_2234 | 2415032 | 2416795 | + | HTH_1 |
| STP | HRGMv2_2788_1 | HRGMv2_2788_1_2235 | 2417120 | 2418694 | + | HD |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2236 | 2419137 | 2420846 | + | 3.A.1.5.19 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2237 | 2420978 | 2421913 | + | 3.A.1.5.19 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2238 | 2421915 | 2423018 | + | 3.A.1.5.19 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2239 | 2423032 | 2424129 | + | 3.A.1.5.25 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2240 | 2424131 | 2425063 | + | 3.A.1.5.19 |
| CAZyme | HRGMv2_2788_1 | HRGMv2_2788_1_2241 | 2425191 | 2426693 | - | GH25 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2242 | 2427061 | 2428119 | + | 9.A.23.1.1 |
Gene ID: HRGMv2_2788_1_2226
Type: TC
Location: 2407116 - 2407682 (-)
Type: TC
Location: 2407116 - 2407682 (-)
Gene ID: HRGMv2_2788_1_2227
Type: TC
Location: 2407688 - 2408281 (-)
Type: TC
Location: 2407688 - 2408281 (-)
Gene ID: HRGMv2_2788_1_2228
Type:
Location: 2408586 - 2408960 (-)
Type:
Location: 2408586 - 2408960 (-)
Gene ID: HRGMv2_2788_1_2229
Type: TC
Location: 2408974 - 2409948 (-)
Type: TC
Location: 2408974 - 2409948 (-)
Gene ID: HRGMv2_2788_1_2230
Type: TC
Location: 2409938 - 2410966 (-)
Type: TC
Location: 2409938 - 2410966 (-)
Gene ID: HRGMv2_2788_1_2231
Type: TC
Location: 2410979 - 2411908 (-)
Type: TC
Location: 2410979 - 2411908 (-)
Gene ID: HRGMv2_2788_1_2232
Type: TC
Location: 2411923 - 2412882 (-)
Type: TC
Location: 2411923 - 2412882 (-)
Gene ID: HRGMv2_2788_1_2233
Type: TC
Location: 2412997 - 2414769 (-)
Type: TC
Location: 2412997 - 2414769 (-)
Gene ID: HRGMv2_2788_1_2234
Type: TF
Location: 2415032 - 2416795 (+)
Type: TF
Location: 2415032 - 2416795 (+)
Gene ID: HRGMv2_2788_1_2235
Type: STP
Location: 2417120 - 2418694 (+)
Type: STP
Location: 2417120 - 2418694 (+)
Gene ID: HRGMv2_2788_1_2236
Type: TC
Location: 2419137 - 2420846 (+)
Type: TC
Location: 2419137 - 2420846 (+)
Gene ID: HRGMv2_2788_1_2237
Type: TC
Location: 2420978 - 2421913 (+)
Type: TC
Location: 2420978 - 2421913 (+)
Gene ID: HRGMv2_2788_1_2238
Type: TC
Location: 2421915 - 2423018 (+)
Type: TC
Location: 2421915 - 2423018 (+)
Gene ID: HRGMv2_2788_1_2239
Type: TC
Location: 2423032 - 2424129 (+)
Type: TC
Location: 2423032 - 2424129 (+)
Gene ID: HRGMv2_2788_1_2240
Type: TC
Location: 2424131 - 2425063 (+)
Type: TC
Location: 2424131 - 2425063 (+)
Gene ID: HRGMv2_2788_1_2241
Type: CAZyme
Location: 2425191 - 2426693 (-)
Type: CAZyme
Location: 2425191 - 2426693 (-)
Gene ID: HRGMv2_2788_1_2242
Type: TC
Location: 2427061 - 2428119 (+)
Type: TC
Location: 2427061 - 2428119 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_I
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.