Cluster: HRGMv2_2788_CGC25
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2788
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2200 | 2381146 | 2382540 | - | 3.A.2.1.5 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2201 | 2382741 | 2383589 | - | 3.A.2.1.5 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2202 | 2383610 | 2385202 | - | 3.A.2.1.5 |
| pfam | HRGMv2_2788_1 | HRGMv2_2788_1_2203 | 2385351 | 2385890 | - | OSCP |
| pfam | HRGMv2_2788_1 | HRGMv2_2788_1_2204 | 2385887 | 2386393 | - | ATP-synt_B |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2205 | 2386435 | 2386716 | - | 3.A.2.1.2 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_2206 | 2386775 | 2387518 | - | 3.A.2.1.5 |
| pfam | HRGMv2_2788_1 | HRGMv2_2788_1_2207 | 2387522 | 2388022 | - | ATP-synt_I |
| pfam | HRGMv2_2788_1 | HRGMv2_2788_1_2208 | 2388048 | 2388308 | - | ATPase_gene1 |
| CAZyme | HRGMv2_2788_1 | HRGMv2_2788_1_2209 | 2388710 | 2390128 | - | GT5 |
| pfam | HRGMv2_2788_1 | HRGMv2_2788_1_2210 | 2390292 | 2391419 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2788_1 | HRGMv2_2788_1_2211 | 2391413 | 2392606 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_2788_1 | HRGMv2_2788_1_2212 | 2392672 | 2394861 | - | CBM48 | GH13_9 |
Gene ID: HRGMv2_2788_1_2200
Type: TC
Location: 2381146 - 2382540 (-)
Type: TC
Location: 2381146 - 2382540 (-)
Gene ID: HRGMv2_2788_1_2201
Type: TC
Location: 2382741 - 2383589 (-)
Type: TC
Location: 2382741 - 2383589 (-)
Gene ID: HRGMv2_2788_1_2202
Type: TC
Location: 2383610 - 2385202 (-)
Type: TC
Location: 2383610 - 2385202 (-)
Gene ID: HRGMv2_2788_1_2203
Type: pfam
Location: 2385351 - 2385890 (-)
Type: pfam
Location: 2385351 - 2385890 (-)
Gene ID: HRGMv2_2788_1_2204
Type: pfam
Location: 2385887 - 2386393 (-)
Type: pfam
Location: 2385887 - 2386393 (-)
Gene ID: HRGMv2_2788_1_2205
Type: TC
Location: 2386435 - 2386716 (-)
Type: TC
Location: 2386435 - 2386716 (-)
Gene ID: HRGMv2_2788_1_2206
Type: TC
Location: 2386775 - 2387518 (-)
Type: TC
Location: 2386775 - 2387518 (-)
Gene ID: HRGMv2_2788_1_2207
Type: pfam
Location: 2387522 - 2388022 (-)
Type: pfam
Location: 2387522 - 2388022 (-)
Gene ID: HRGMv2_2788_1_2208
Type: pfam
Location: 2388048 - 2388308 (-)
Type: pfam
Location: 2388048 - 2388308 (-)
Gene ID: HRGMv2_2788_1_2209
Type: CAZyme
Location: 2388710 - 2390128 (-)
Type: CAZyme
Location: 2388710 - 2390128 (-)
Gene ID: HRGMv2_2788_1_2210
Type: pfam
Location: 2390292 - 2391419 (-)
Type: pfam
Location: 2390292 - 2391419 (-)
Gene ID: HRGMv2_2788_1_2211
Type: pfam
Location: 2391413 - 2392606 (-)
Type: pfam
Location: 2391413 - 2392606 (-)
Gene ID: HRGMv2_2788_1_2212
Type: CAZyme
Location: 2392672 - 2394861 (-)
Type: CAZyme
Location: 2392672 - 2394861 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_I
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.