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Cluster: HRGMv2_2788_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2788_1 HRGMv2_2788_1_1704 1875703 1877178 - GH32
STP HRGMv2_2788_1 HRGMv2_2788_1_1705 1877203 1878873 - SBP_bac_1
TC HRGMv2_2788_1 HRGMv2_2788_1_1706 1878950 1879855 - 3.A.1.1.10
TC HRGMv2_2788_1 HRGMv2_2788_1_1707 1879869 1880816 - 3.A.1.1.10
TF HRGMv2_2788_1 HRGMv2_2788_1_1708 1881150 1882205 + LacI
TC HRGMv2_2788_1 HRGMv2_2788_1_1709 1882223 1882873 + 9.B.28.1.2
NULL(UNKNOWN) HRGMv2_2788_1 HRGMv2_2788_1_1710 1882860 1883477 + NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_2788_1 HRGMv2_2788_1_1711 1883521 1884453 + PfkB
CAZyme HRGMv2_2788_1 HRGMv2_2788_1_1712 1884457 1886286 + GH13_4
STP HRGMv2_2788_1 HRGMv2_2788_1_1713 1886762 1887928 + Peripla_BP_2
TC HRGMv2_2788_1 HRGMv2_2788_1_1714 1887928 1888959 + 3.A.1.14.11
TC HRGMv2_2788_1 HRGMv2_2788_1_1715 1888956 1889759 + 3.A.1.14.11
Gene ID: HRGMv2_2788_1_1704
Type: CAZyme
Location: 1875703 - 1877178 (-)
Gene ID: HRGMv2_2788_1_1705
Type: STP
Location: 1877203 - 1878873 (-)
Gene ID: HRGMv2_2788_1_1706
Type: TC
Location: 1878950 - 1879855 (-)
Gene ID: HRGMv2_2788_1_1707
Type: TC
Location: 1879869 - 1880816 (-)
Gene ID: HRGMv2_2788_1_1708
Type: TF
Location: 1881150 - 1882205 (+)
Gene ID: HRGMv2_2788_1_1709
Type: TC
Location: 1882223 - 1882873 (+)
Gene ID: HRGMv2_2788_1_1710
Type:
Location: 1882860 - 1883477 (+)
Gene ID: HRGMv2_2788_1_1711
Type: STP
Location: 1883521 - 1884453 (+)
Gene ID: HRGMv2_2788_1_1712
Type: CAZyme
Location: 1884457 - 1886286 (+)
Gene ID: HRGMv2_2788_1_1713
Type: STP
Location: 1886762 - 1887928 (+)
Gene ID: HRGMv2_2788_1_1714
Type: TC
Location: 1887928 - 1888959 (+)
Gene ID: HRGMv2_2788_1_1715
Type: TC
Location: 1888956 - 1889759 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2788_1_1715 vegan > omnivore 1.31846 0.04651

🧭 Explore Read Mapping of CGC

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