Cluster: HRGMv2_2788_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2788
- CGC Family ID: CGCFAM_03687
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_956 | 1041525 | 1042694 | + | 2.A.21.9.1 |
| TF | HRGMv2_2788_1 | HRGMv2_2788_1_957 | 1042672 | 1043370 | + | Trans_reg_C |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_958 | 1043374 | 1044231 | + | 2.A.7.2.1 |
| NULL(UNKNOWN) | HRGMv2_2788_1 | HRGMv2_2788_1_959 | 1044335 | 1044799 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2788_1 | HRGMv2_2788_1_960 | 1044799 | 1045407 | + | Zn_dep_PLPC |
| CAZyme | HRGMv2_2788_1 | HRGMv2_2788_1_961 | 1045364 | 1046527 | + | GT4 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_962 | 1046524 | 1047915 | + | 2.A.66.2.20 |
Gene ID: HRGMv2_2788_1_956
Type: TC
Location: 1041525 - 1042694 (+)
Type: TC
Location: 1041525 - 1042694 (+)
Gene ID: HRGMv2_2788_1_957
Type: TF
Location: 1042672 - 1043370 (+)
Type: TF
Location: 1042672 - 1043370 (+)
Gene ID: HRGMv2_2788_1_958
Type: TC
Location: 1043374 - 1044231 (+)
Type: TC
Location: 1043374 - 1044231 (+)
Gene ID: HRGMv2_2788_1_959
Type:
Location: 1044335 - 1044799 (+)
Type:
Location: 1044335 - 1044799 (+)
Gene ID: HRGMv2_2788_1_960
Type: pfam
Location: 1044799 - 1045407 (+)
Type: pfam
Location: 1044799 - 1045407 (+)
Gene ID: HRGMv2_2788_1_961
Type: CAZyme
Location: 1045364 - 1046527 (+)
Type: CAZyme
Location: 1045364 - 1046527 (+)
Gene ID: HRGMv2_2788_1_962
Type: TC
Location: 1046524 - 1047915 (+)
Type: TC
Location: 1046524 - 1047915 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_I
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2788_1_956 | vegetarian > vegan | 3.37888 | 0.01560 |
| HRGMv2_2788_1_957 | vegetarian > vegan | 2.63053 | 0.01560 |
| HRGMv2_2788_1_958 | vegetarian > vegan | 2.00289 | 0.01560 |
| HRGMv2_2788_1_959 | vegetarian > vegan | 3.30057 | 0.01560 |
| HRGMv2_2788_1_960 | vegetarian > vegan | 4.30600 | 0.01560 |
| HRGMv2_2788_1_961 | vegetarian > vegan | 4.90274 | 0.01560 |
| HRGMv2_2788_1_962 | vegetarian > vegan | 1.67318 | 0.01560 |