Cluster: HRGMv2_2783_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2783
- CGC Family ID: CGCFAM_01040
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2783_4 | HRGMv2_2783_4_127 | 99038 | 99961 | + | 3.A.1.1.9 |
| TC | HRGMv2_2783_4 | HRGMv2_2783_4_128 | 99976 | 100869 | + | 3.A.1.1.9 |
| NULL(UNKNOWN) | HRGMv2_2783_4 | HRGMv2_2783_4_129 | 100880 | 102397 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2783_4 | HRGMv2_2783_4_130 | 102394 | 104487 | + | GH106 |
Gene ID: HRGMv2_2783_4_127
Type: TC
Location: 99038 - 99961 (+)
Type: TC
Location: 99038 - 99961 (+)
Gene ID: HRGMv2_2783_4_128
Type: TC
Location: 99976 - 100869 (+)
Type: TC
Location: 99976 - 100869 (+)
Gene ID: HRGMv2_2783_4_129
Type:
Location: 100880 - 102397 (+)
Type:
Location: 100880 - 102397 (+)
Gene ID: HRGMv2_2783_4_130
Type: CAZyme
Location: 102394 - 104487 (+)
Type: CAZyme
Location: 102394 - 104487 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900545925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2783_4_127 | vegetarian > vegan | 3.32788 | 0.00353 |
| HRGMv2_2783_4_128 | vegetarian > omnivore | 1.06930 | 0.02254 |
| HRGMv2_2783_4_128 | vegetarian > vegan | 1.61608 | 0.00353 |
| HRGMv2_2783_4_129 | vegetarian > omnivore | 1.07934 | 0.02254 |
| HRGMv2_2783_4_129 | vegetarian > vegan | 2.91773 | 0.00353 |
| HRGMv2_2783_4_130 | vegetarian > vegan | 1.66918 | 0.00353 |