Cluster: HRGMv2_2783_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2783
- CGC Family ID: CGCFAM_10181
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2783_3 | HRGMv2_2783_3_32 | 31633 | 32946 | + | GH4 |
| TF | HRGMv2_2783_3 | HRGMv2_2783_3_33 | 32953 | 33792 | - | HTH_AraC | HTH_AraC |
| STP | HRGMv2_2783_3 | HRGMv2_2783_3_34 | 33996 | 35363 | + | SBP_bac_1 |
| TC | HRGMv2_2783_3 | HRGMv2_2783_3_35 | 35540 | 36388 | + | 3.A.1.1.25 |
| TC | HRGMv2_2783_3 | HRGMv2_2783_3_36 | 36388 | 37239 | + | 3.A.1.1.42 |
| pfam | HRGMv2_2783_3 | HRGMv2_2783_3_37 | 37264 | 38322 | + | Ldh_2 |
| pfam | HRGMv2_2783_3 | HRGMv2_2783_3_38 | 38336 | 39001 | + | Aldolase |
| TC | HRGMv2_2783_3 | HRGMv2_2783_3_39 | 39016 | 39864 | + | 8.A.5.1.4 |
Gene ID: HRGMv2_2783_3_32
Type: CAZyme
Location: 31633 - 32946 (+)
Type: CAZyme
Location: 31633 - 32946 (+)
Gene ID: HRGMv2_2783_3_33
Type: TF
Location: 32953 - 33792 (-)
Type: TF
Location: 32953 - 33792 (-)
Gene ID: HRGMv2_2783_3_34
Type: STP
Location: 33996 - 35363 (+)
Type: STP
Location: 33996 - 35363 (+)
Gene ID: HRGMv2_2783_3_35
Type: TC
Location: 35540 - 36388 (+)
Type: TC
Location: 35540 - 36388 (+)
Gene ID: HRGMv2_2783_3_36
Type: TC
Location: 36388 - 37239 (+)
Type: TC
Location: 36388 - 37239 (+)
Gene ID: HRGMv2_2783_3_37
Type: pfam
Location: 37264 - 38322 (+)
Type: pfam
Location: 37264 - 38322 (+)
Gene ID: HRGMv2_2783_3_38
Type: pfam
Location: 38336 - 39001 (+)
Type: pfam
Location: 38336 - 39001 (+)
Gene ID: HRGMv2_2783_3_39
Type: TC
Location: 39016 - 39864 (+)
Type: TC
Location: 39016 - 39864 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900545925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2783_3_32 | vegetarian > vegan | 1.39809 | 0.00353 |
| HRGMv2_2783_3_33 | vegetarian > vegan | 1.31067 | 0.00353 |
| HRGMv2_2783_3_34 | vegetarian > vegan | 1.57443 | 0.00353 |
| HRGMv2_2783_3_35 | vegetarian > vegan | 1.57713 | 0.00353 |
| HRGMv2_2783_3_36 | vegetarian > vegan | 1.83023 | 0.00353 |
| HRGMv2_2783_3_37 | vegetarian > vegan | 1.15777 | 0.00353 |