Cluster: HRGMv2_2783_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2783
- CGC Family ID: CGCFAM_08315
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2783_1 | HRGMv2_2783_1_119 | 131684 | 133303 | - | 8.A.7.1.1 |
| CAZyme | HRGMv2_2783_1 | HRGMv2_2783_1_120 | 133300 | 134751 | - | GH1 |
| STP | HRGMv2_2783_1 | HRGMv2_2783_1_121 | 134768 | 135025 | - | PTS-HPr |
| TC | HRGMv2_2783_1 | HRGMv2_2783_1_122 | 135058 | 135546 | - | 4.A.1.2.5 |
| TC | HRGMv2_2783_1 | HRGMv2_2783_1_123 | 135619 | 136983 | - | 4.A.1.2.2 |
Gene ID: HRGMv2_2783_1_119
Type: TC
Location: 131684 - 133303 (-)
Type: TC
Location: 131684 - 133303 (-)
Gene ID: HRGMv2_2783_1_120
Type: CAZyme
Location: 133300 - 134751 (-)
Type: CAZyme
Location: 133300 - 134751 (-)
Gene ID: HRGMv2_2783_1_121
Type: STP
Location: 134768 - 135025 (-)
Type: STP
Location: 134768 - 135025 (-)
Gene ID: HRGMv2_2783_1_122
Type: TC
Location: 135058 - 135546 (-)
Type: TC
Location: 135058 - 135546 (-)
Gene ID: HRGMv2_2783_1_123
Type: TC
Location: 135619 - 136983 (-)
Type: TC
Location: 135619 - 136983 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900545925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2783_1_119 | vegetarian > vegan | 1.40825 | 0.00353 |
| HRGMv2_2783_1_120 | vegetarian > vegan | 1.49739 | 0.00353 |
| HRGMv2_2783_1_121 | vegetarian > omnivore | 1.46168 | 0.02254 |
| HRGMv2_2783_1_121 | vegetarian > vegan | 1.19004 | 0.00353 |
| HRGMv2_2783_1_122 | vegetarian > omnivore | 1.47598 | 0.02254 |
| HRGMv2_2783_1_123 | vegetarian > vegan | 2.22001 | 0.00353 |