Cluster: HRGMv2_2783_CGC34
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2783
- CGC Family ID: CGCFAM_10180
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2783_50 | HRGMv2_2783_50_4 | 3536 | 4432 | + | 3.A.1.1.11 |
| TC | HRGMv2_2783_50 | HRGMv2_2783_50_5 | 4437 | 5276 | + | 3.A.1.1.11 |
| CAZyme | HRGMv2_2783_50 | HRGMv2_2783_50_6 | 5280 | 7295 | + | GH43_32 |
| CAZyme | HRGMv2_2783_50 | HRGMv2_2783_50_7 | 7321 | 9348 | + | CBM13 | CBM42 | GH93 |
| CAZyme | HRGMv2_2783_50 | HRGMv2_2783_50_8 | 9363 | 11114 | + | GH2 |
Gene ID: HRGMv2_2783_50_4
Type: TC
Location: 3536 - 4432 (+)
Type: TC
Location: 3536 - 4432 (+)
Gene ID: HRGMv2_2783_50_5
Type: TC
Location: 4437 - 5276 (+)
Type: TC
Location: 4437 - 5276 (+)
Gene ID: HRGMv2_2783_50_6
Type: CAZyme
Location: 5280 - 7295 (+)
Type: CAZyme
Location: 5280 - 7295 (+)
Gene ID: HRGMv2_2783_50_7
Type: CAZyme
Location: 7321 - 9348 (+)
Type: CAZyme
Location: 7321 - 9348 (+)
Gene ID: HRGMv2_2783_50_8
Type: CAZyme
Location: 9363 - 11114 (+)
Type: CAZyme
Location: 9363 - 11114 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900545925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2783_50_4 | vegetarian > vegan | 1.42904 | 0.00353 |
| HRGMv2_2783_50_5 | vegetarian > vegan | 1.03546 | 0.00353 |
| HRGMv2_2783_50_6 | vegetarian > vegan | 1.60387 | 0.00353 |
| HRGMv2_2783_50_7 | vegetarian > vegan | 1.21529 | 0.00353 |
| HRGMv2_2783_50_8 | vegetarian > vegan | 1.42357 | 0.00353 |