Cluster: HRGMv2_2783_CGC30
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2783
- CGC Family ID: CGCFAM_06171
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2783_28 | HRGMv2_2783_28_18 | 20862 | 23255 | - | GH94 |
| CAZyme | HRGMv2_2783_28 | HRGMv2_2783_28_19 | 23269 | 24480 | - | GH18 |
| pfam | HRGMv2_2783_28 | HRGMv2_2783_28_20 | 24855 | 26042 | + | Acetyltransf_9 | SCP2_2 |
| pfam | HRGMv2_2783_28 | HRGMv2_2783_28_21 | 26094 | 27701 | + | Cthe_2159 |
| TC | HRGMv2_2783_28 | HRGMv2_2783_28_22 | 27795 | 29045 | - | 2.A.23.1.5 |
Gene ID: HRGMv2_2783_28_18
Type: CAZyme
Location: 20862 - 23255 (-)
Type: CAZyme
Location: 20862 - 23255 (-)
Gene ID: HRGMv2_2783_28_19
Type: CAZyme
Location: 23269 - 24480 (-)
Type: CAZyme
Location: 23269 - 24480 (-)
Gene ID: HRGMv2_2783_28_20
Type: pfam
Location: 24855 - 26042 (+)
Type: pfam
Location: 24855 - 26042 (+)
Gene ID: HRGMv2_2783_28_21
Type: pfam
Location: 26094 - 27701 (+)
Type: pfam
Location: 26094 - 27701 (+)
Gene ID: HRGMv2_2783_28_22
Type: TC
Location: 27795 - 29045 (-)
Type: TC
Location: 27795 - 29045 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900545925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2783_28_18 | vegetarian > omnivore | 1.10182 | 0.02254 |
| HRGMv2_2783_28_18 | vegetarian > vegan | 1.39816 | 0.00353 |
| HRGMv2_2783_28_19 | vegetarian > omnivore | 1.48648 | 0.02254 |
| HRGMv2_2783_28_19 | vegetarian > vegan | 1.05805 | 0.00353 |
| HRGMv2_2783_28_21 | vegetarian > omnivore | 1.02962 | 0.02254 |
| HRGMv2_2783_28_21 | vegetarian > vegan | 2.25892 | 0.00353 |