Cluster: HRGMv2_2783_CGC29
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2783
- CGC Family ID: CGCFAM_03281
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2783_25 | HRGMv2_2783_25_3 | 734 | 1222 | - | 3.A.7.19.1 |
| pfam | HRGMv2_2783_25 | HRGMv2_2783_25_4 | 1435 | 1599 | - | Alpha-amylase |
| TF | HRGMv2_2783_25 | HRGMv2_2783_25_5 | 1633 | 2526 | - | HTH_AraC |
| CAZyme | HRGMv2_2783_25 | HRGMv2_2783_25_6 | 2520 | 4139 | - | GH66 |
| TC | HRGMv2_2783_25 | HRGMv2_2783_25_7 | 4136 | 5014 | - | 3.A.1.1.18 |
| TC | HRGMv2_2783_25 | HRGMv2_2783_25_8 | 5017 | 5964 | - | 3.A.1.1.7 |
Gene ID: HRGMv2_2783_25_3
Type: TC
Location: 734 - 1222 (-)
Type: TC
Location: 734 - 1222 (-)
Gene ID: HRGMv2_2783_25_4
Type: pfam
Location: 1435 - 1599 (-)
Type: pfam
Location: 1435 - 1599 (-)
Gene ID: HRGMv2_2783_25_5
Type: TF
Location: 1633 - 2526 (-)
Type: TF
Location: 1633 - 2526 (-)
Gene ID: HRGMv2_2783_25_6
Type: CAZyme
Location: 2520 - 4139 (-)
Type: CAZyme
Location: 2520 - 4139 (-)
Gene ID: HRGMv2_2783_25_7
Type: TC
Location: 4136 - 5014 (-)
Type: TC
Location: 4136 - 5014 (-)
Gene ID: HRGMv2_2783_25_8
Type: TC
Location: 5017 - 5964 (-)
Type: TC
Location: 5017 - 5964 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900545925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2783_25_4 | vegetarian > vegan | 1.61530 | 0.00353 |
| HRGMv2_2783_25_5 | vegetarian > vegan | 1.23646 | 0.00353 |
| HRGMv2_2783_25_6 | vegetarian > vegan | 2.02660 | 0.00353 |
| HRGMv2_2783_25_7 | vegetarian > vegan | 1.96959 | 0.00353 |
| HRGMv2_2783_25_8 | vegetarian > omnivore | 1.16941 | 0.02254 |
| HRGMv2_2783_25_8 | vegetarian > vegan | 1.64390 | 0.00353 |