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Cluster: HRGMv2_2783_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2783_21 HRGMv2_2783_21_22 22275 23282 + 8.A.59.2.1
pfam HRGMv2_2783_21 HRGMv2_2783_21_23 23279 24688 + ABC_tran
STP HRGMv2_2783_21 HRGMv2_2783_21_24 25005 26003 + Peripla_BP_1
CAZyme HRGMv2_2783_21 HRGMv2_2783_21_25 26054 27808 + CBM32
TC HRGMv2_2783_21 HRGMv2_2783_21_26 28029 29540 + 3.A.1.2.13
TC HRGMv2_2783_21 HRGMv2_2783_21_27 29563 30582 + 3.A.1.2.11
STP HRGMv2_2783_21 HRGMv2_2783_21_28 30627 31625 + Peripla_BP_1
CAZyme HRGMv2_2783_21 HRGMv2_2783_21_29 31736 37675 + CBM6 | GH92
CAZyme HRGMv2_2783_21 HRGMv2_2783_21_30 38077 44178 + GH92
Gene ID: HRGMv2_2783_21_22
Type: TC
Location: 22275 - 23282 (+)
Gene ID: HRGMv2_2783_21_23
Type: pfam
Location: 23279 - 24688 (+)
Gene ID: HRGMv2_2783_21_24
Type: STP
Location: 25005 - 26003 (+)
Gene ID: HRGMv2_2783_21_25
Type: CAZyme
Location: 26054 - 27808 (+)
Gene ID: HRGMv2_2783_21_26
Type: TC
Location: 28029 - 29540 (+)
Gene ID: HRGMv2_2783_21_27
Type: TC
Location: 29563 - 30582 (+)
Gene ID: HRGMv2_2783_21_28
Type: STP
Location: 30627 - 31625 (+)
Gene ID: HRGMv2_2783_21_29
Type: CAZyme
Location: 31736 - 37675 (+)
Gene ID: HRGMv2_2783_21_30
Type: CAZyme
Location: 38077 - 44178 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2783_21_25 vegetarian > vegan 1.13057 0.00353

🧭 Explore Read Mapping of CGC

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