Cluster: HRGMv2_2783_CGC27
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2783
- CGC Family ID: CGCFAM_02727
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2783_20 | HRGMv2_2783_20_13 | 11094 | 11996 | + | 3.A.1.1.7 |
| TC | HRGMv2_2783_20 | HRGMv2_2783_20_14 | 11998 | 12828 | + | 3.A.1.1.42 |
| CAZyme | HRGMv2_2783_20 | HRGMv2_2783_20_15 | 12843 | 15434 | + | CBM67 | GH78 |
Gene ID: HRGMv2_2783_20_13
Type: TC
Location: 11094 - 11996 (+)
Type: TC
Location: 11094 - 11996 (+)
Gene ID: HRGMv2_2783_20_14
Type: TC
Location: 11998 - 12828 (+)
Type: TC
Location: 11998 - 12828 (+)
Gene ID: HRGMv2_2783_20_15
Type: CAZyme
Location: 12843 - 15434 (+)
Type: CAZyme
Location: 12843 - 15434 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900545925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2783_20_13 | vegetarian > omnivore | 1.14650 | 0.02254 |
| HRGMv2_2783_20_14 | vegetarian > vegan | 1.69921 | 0.00353 |