Cluster: HRGMv2_2783_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2783
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2783_17 | HRGMv2_2783_17_43 | 57557 | 59722 | - | CBM67 | GH78 |
| TF | HRGMv2_2783_17 | HRGMv2_2783_17_44 | 59826 | 60710 | + | HTH_AraC | HTH_AraC |
| STP | HRGMv2_2783_17 | HRGMv2_2783_17_45 | 60725 | 62503 | + | HATPase_c | dCache_1 |
| TC | HRGMv2_2783_17 | HRGMv2_2783_17_46 | 62484 | 64127 | + | 3.A.1.1.24 |
| CAZyme | HRGMv2_2783_17 | HRGMv2_2783_17_47 | 64161 | 65198 | + | GH109 |
| CAZyme | HRGMv2_2783_17 | HRGMv2_2783_17_48 | 65384 | 66091 | + | CE14 |
Gene ID: HRGMv2_2783_17_43
Type: CAZyme
Location: 57557 - 59722 (-)
Type: CAZyme
Location: 57557 - 59722 (-)
Gene ID: HRGMv2_2783_17_44
Type: TF
Location: 59826 - 60710 (+)
Type: TF
Location: 59826 - 60710 (+)
Gene ID: HRGMv2_2783_17_45
Type: STP
Location: 60725 - 62503 (+)
Type: STP
Location: 60725 - 62503 (+)
Gene ID: HRGMv2_2783_17_46
Type: TC
Location: 62484 - 64127 (+)
Type: TC
Location: 62484 - 64127 (+)
Gene ID: HRGMv2_2783_17_47
Type: CAZyme
Location: 64161 - 65198 (+)
Type: CAZyme
Location: 64161 - 65198 (+)
Gene ID: HRGMv2_2783_17_48
Type: CAZyme
Location: 65384 - 66091 (+)
Type: CAZyme
Location: 65384 - 66091 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900545925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2783_17_43 | vegan > omnivore | 1.42166 | 0.02178 |
| HRGMv2_2783_17_44 | vegetarian > omnivore | 1.99398 | 0.02254 |
| HRGMv2_2783_17_45 | vegetarian > omnivore | 2.39580 | 0.02254 |
| HRGMv2_2783_17_46 | vegetarian > omnivore | 1.49867 | 0.02254 |