Cluster: HRGMv2_2783_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2783
- CGC Family ID: CGCFAM_01615
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2783_17 | HRGMv2_2783_17_32 | 43338 | 44381 | - | GH109 |
| pfam | HRGMv2_2783_17 | HRGMv2_2783_17_33 | 44521 | 45459 | - | GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3 |
| TF | HRGMv2_2783_17 | HRGMv2_2783_17_34 | 45472 | 47796 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2783_17 | HRGMv2_2783_17_35 | 48188 | 49024 | + | 3.A.1.1.10 |
| TC | HRGMv2_2783_17 | HRGMv2_2783_17_36 | 49035 | 49907 | + | 3.A.1.1.10 |
Gene ID: HRGMv2_2783_17_32
Type: CAZyme
Location: 43338 - 44381 (-)
Type: CAZyme
Location: 43338 - 44381 (-)
Gene ID: HRGMv2_2783_17_33
Type: pfam
Location: 44521 - 45459 (-)
Type: pfam
Location: 44521 - 45459 (-)
Gene ID: HRGMv2_2783_17_34
Type: TF
Location: 45472 - 47796 (-)
Type: TF
Location: 45472 - 47796 (-)
Gene ID: HRGMv2_2783_17_35
Type: TC
Location: 48188 - 49024 (+)
Type: TC
Location: 48188 - 49024 (+)
Gene ID: HRGMv2_2783_17_36
Type: TC
Location: 49035 - 49907 (+)
Type: TC
Location: 49035 - 49907 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900545925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2783_17_32 | vegetarian > omnivore | 1.73415 | 0.02254 |
| HRGMv2_2783_17_33 | vegetarian > omnivore | 1.52697 | 0.02254 |