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Cluster: HRGMv2_2783_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2783_17 HRGMv2_2783_17_15 11961 14885 - GH106
TF HRGMv2_2783_17 HRGMv2_2783_17_16 14872 17121 - HTH_AraC | HTH_AraC
TC HRGMv2_2783_17 HRGMv2_2783_17_17 17396 18358 + 3.A.1.1.10
TC HRGMv2_2783_17 HRGMv2_2783_17_18 18358 19239 + 3.A.1.1.10
STP HRGMv2_2783_17 HRGMv2_2783_17_19 19291 20847 + SBP_bac_1
CAZyme HRGMv2_2783_17 HRGMv2_2783_17_20 20968 26412 + GH141
CAZyme HRGMv2_2783_17 HRGMv2_2783_17_21 26525 28156 + GH20
CAZyme HRGMv2_2783_17 HRGMv2_2783_17_22 28162 30363 + CBM67 | GH78
Gene ID: HRGMv2_2783_17_15
Type: CAZyme
Location: 11961 - 14885 (-)
Gene ID: HRGMv2_2783_17_16
Type: TF
Location: 14872 - 17121 (-)
Gene ID: HRGMv2_2783_17_17
Type: TC
Location: 17396 - 18358 (+)
Gene ID: HRGMv2_2783_17_18
Type: TC
Location: 18358 - 19239 (+)
Gene ID: HRGMv2_2783_17_19
Type: STP
Location: 19291 - 20847 (+)
Gene ID: HRGMv2_2783_17_20
Type: CAZyme
Location: 20968 - 26412 (+)
Gene ID: HRGMv2_2783_17_21
Type: CAZyme
Location: 26525 - 28156 (+)
Gene ID: HRGMv2_2783_17_22
Type: CAZyme
Location: 28162 - 30363 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2783_17_20 vegetarian > vegan 1.94075 0.00353

🧭 Explore Read Mapping of CGC

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