Cluster: HRGMv2_2783_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2783
- CGC Family ID: CGCFAM_02727
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2783_11 | HRGMv2_2783_11_7 | 6672 | 8915 | - | CBM67 | GH78 |
| CAZyme | HRGMv2_2783_11 | HRGMv2_2783_11_8 | 8985 | 14933 | - | GH129 |
| TC | HRGMv2_2783_11 | HRGMv2_2783_11_9 | 14939 | 15766 | - | 3.A.1.1.42 |
| TC | HRGMv2_2783_11 | HRGMv2_2783_11_10 | 15763 | 16626 | - | 3.A.1.1.28 |
Gene ID: HRGMv2_2783_11_7
Type: CAZyme
Location: 6672 - 8915 (-)
Type: CAZyme
Location: 6672 - 8915 (-)
Gene ID: HRGMv2_2783_11_8
Type: CAZyme
Location: 8985 - 14933 (-)
Type: CAZyme
Location: 8985 - 14933 (-)
Gene ID: HRGMv2_2783_11_9
Type: TC
Location: 14939 - 15766 (-)
Type: TC
Location: 14939 - 15766 (-)
Gene ID: HRGMv2_2783_11_10
Type: TC
Location: 15763 - 16626 (-)
Type: TC
Location: 15763 - 16626 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900545925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2783_11_8 | vegetarian > omnivore | 1.11712 | 0.02254 |
| HRGMv2_2783_11_9 | vegetarian > omnivore | 1.37354 | 0.02254 |
| HRGMv2_2783_11_10 | vegetarian > omnivore | 1.32524 | 0.02254 |