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Cluster: HRGMv2_2783_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2783_6 HRGMv2_2783_6_67 59969 61213 + 2.A.86.1.8
TC HRGMv2_2783_6 HRGMv2_2783_6_68 61242 63035 + 2.A.103.1.3
pfam HRGMv2_2783_6 HRGMv2_2783_6_69 63032 64411 + Transpeptidase
pfam HRGMv2_2783_6 HRGMv2_2783_6_70 64501 65766 + Fe-ADH_2
TC HRGMv2_2783_6 HRGMv2_2783_6_71 65796 67220 + 9.B.160.1.10
NULL(UNKNOWN) HRGMv2_2783_6 HRGMv2_2783_6_72 67359 67631 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2783_6 HRGMv2_2783_6_73 67696 68487 + CE4
Gene ID: HRGMv2_2783_6_67
Type: TC
Location: 59969 - 61213 (+)
Gene ID: HRGMv2_2783_6_68
Type: TC
Location: 61242 - 63035 (+)
Gene ID: HRGMv2_2783_6_69
Type: pfam
Location: 63032 - 64411 (+)
Gene ID: HRGMv2_2783_6_70
Type: pfam
Location: 64501 - 65766 (+)
Gene ID: HRGMv2_2783_6_71
Type: TC
Location: 65796 - 67220 (+)
Gene ID: HRGMv2_2783_6_72
Type:
Location: 67359 - 67631 (+)
Gene ID: HRGMv2_2783_6_73
Type: CAZyme
Location: 67696 - 68487 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2783_6_72 vegetarian > omnivore 1.28814 0.02254
HRGMv2_2783_6_72 vegetarian > vegan 2.10887 0.00353

🧭 Explore Read Mapping of CGC

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