Cluster: HRGMv2_2783_CGC11
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2783
- CGC Family ID: CGCFAM_04377
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2783_5 | HRGMv2_2783_5_137 | 153614 | 155494 | + | 3.A.3.6.10 |
| STP | HRGMv2_2783_5 | HRGMv2_2783_5_138 | 155858 | 157510 | + | SBP_bac_1 |
| TC | HRGMv2_2783_5 | HRGMv2_2783_5_139 | 157606 | 158541 | + | 3.A.1.1.9 |
| TC | HRGMv2_2783_5 | HRGMv2_2783_5_140 | 158552 | 159445 | + | 3.A.1.1.9 |
| TF | HRGMv2_2783_5 | HRGMv2_2783_5_141 | 159476 | 160384 | + | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_2783_5 | HRGMv2_2783_5_142 | 160403 | 161461 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2783_5 | HRGMv2_2783_5_143 | 161551 | 163629 | + | GH78 |
| CAZyme | HRGMv2_2783_5 | HRGMv2_2783_5_144 | 163616 | 165166 | + | GH146 |
Gene ID: HRGMv2_2783_5_137
Type: TC
Location: 153614 - 155494 (+)
Type: TC
Location: 153614 - 155494 (+)
Gene ID: HRGMv2_2783_5_138
Type: STP
Location: 155858 - 157510 (+)
Type: STP
Location: 155858 - 157510 (+)
Gene ID: HRGMv2_2783_5_139
Type: TC
Location: 157606 - 158541 (+)
Type: TC
Location: 157606 - 158541 (+)
Gene ID: HRGMv2_2783_5_140
Type: TC
Location: 158552 - 159445 (+)
Type: TC
Location: 158552 - 159445 (+)
Gene ID: HRGMv2_2783_5_141
Type: TF
Location: 159476 - 160384 (+)
Type: TF
Location: 159476 - 160384 (+)
Gene ID: HRGMv2_2783_5_142
Type:
Location: 160403 - 161461 (+)
Type:
Location: 160403 - 161461 (+)
Gene ID: HRGMv2_2783_5_143
Type: CAZyme
Location: 161551 - 163629 (+)
Type: CAZyme
Location: 161551 - 163629 (+)
Gene ID: HRGMv2_2783_5_144
Type: CAZyme
Location: 163616 - 165166 (+)
Type: CAZyme
Location: 163616 - 165166 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900545925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2783_5_138 | vegetarian > omnivore | 1.23765 | 0.02254 |
| HRGMv2_2783_5_138 | vegetarian > vegan | 2.85709 | 0.00353 |
| HRGMv2_2783_5_139 | vegetarian > vegan | 2.16594 | 0.00353 |
| HRGMv2_2783_5_140 | vegetarian > omnivore | 1.17525 | 0.02254 |
| HRGMv2_2783_5_140 | vegetarian > vegan | 1.65111 | 0.00353 |
| HRGMv2_2783_5_142 | vegetarian > vegan | 1.49257 | 0.00353 |
| HRGMv2_2783_5_143 | vegetarian > vegan | 1.59037 | 0.00353 |
| HRGMv2_2783_5_144 | vegetarian > vegan | 2.05809 | 0.00353 |