Cluster: HRGMv2_2774_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2774
- CGC Family ID: CGCFAM_10177
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2774_19 | HRGMv2_2774_19_32 | 37573 | 39192 | + | 4.A.1.2.3 |
| CAZyme | HRGMv2_2774_19 | HRGMv2_2774_19_33 | 39209 | 40660 | + | GH1 |
| pfam | HRGMv2_2774_19 | HRGMv2_2774_19_34 | 40714 | 41709 | - | 2-Hacid_dh | 2-Hacid_dh_C |
| peptidase | HRGMv2_2774_19 | HRGMv2_2774_19_35 | 41921 | 43138 | + | M20.UPB |
| TC | HRGMv2_2774_19 | HRGMv2_2774_19_36 | 43316 | 44701 | - | 2.A.38.4.3 |
Gene ID: HRGMv2_2774_19_32
Type: TC
Location: 37573 - 39192 (+)
Type: TC
Location: 37573 - 39192 (+)
Gene ID: HRGMv2_2774_19_33
Type: CAZyme
Location: 39209 - 40660 (+)
Type: CAZyme
Location: 39209 - 40660 (+)
Gene ID: HRGMv2_2774_19_34
Type: pfam
Location: 40714 - 41709 (-)
Type: pfam
Location: 40714 - 41709 (-)
Gene ID: HRGMv2_2774_19_35
Type: peptidase
Location: 41921 - 43138 (+)
Type: peptidase
Location: 41921 - 43138 (+)
Gene ID: HRGMv2_2774_19_36
Type: TC
Location: 43316 - 44701 (-)
Type: TC
Location: 43316 - 44701 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp900539885
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2774_19_32 | vegan > omnivore | 2.89097 | 0.03107 |
| HRGMv2_2774_19_33 | vegetarian > omnivore | 1.63048 | 0.00560 |