Cluster: HRGMv2_2774_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2774
- CGC Family ID: CGCFAM_06169
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2774_15 | HRGMv2_2774_15_14 | 15139 | 16104 | - | GT2 |
| pfam | HRGMv2_2774_15 | HRGMv2_2774_15_15 | 16792 | 17427 | - | TPK_catalytic | TPK_B1_binding |
| pfam | HRGMv2_2774_15 | HRGMv2_2774_15_16 | 17446 | 18324 | - | MMR_HSR1 | RsgA_GTPase | RsgA_N |
| TC | HRGMv2_2774_15 | HRGMv2_2774_15_17 | 18336 | 20243 | - | 9.B.106.3.1 |
Gene ID: HRGMv2_2774_15_14
Type: CAZyme
Location: 15139 - 16104 (-)
Type: CAZyme
Location: 15139 - 16104 (-)
Gene ID: HRGMv2_2774_15_15
Type: pfam
Location: 16792 - 17427 (-)
Type: pfam
Location: 16792 - 17427 (-)
Gene ID: HRGMv2_2774_15_16
Type: pfam
Location: 17446 - 18324 (-)
Type: pfam
Location: 17446 - 18324 (-)
Gene ID: HRGMv2_2774_15_17
Type: TC
Location: 18336 - 20243 (-)
Type: TC
Location: 18336 - 20243 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp900539885
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2774_15_14 | vegan > omnivore | 2.82746 | 0.03107 |
| HRGMv2_2774_15_14 | vegetarian > omnivore | 2.57288 | 0.00560 |