Cluster: HRGMv2_2774_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2774
- CGC Family ID: CGCFAM_00673
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2774_14 | HRGMv2_2774_14_30 | 37111 | 37692 | - | 2.A.107.1.2 |
| CAZyme | HRGMv2_2774_14 | HRGMv2_2774_14_31 | 38013 | 39002 | - | GT2 |
| CAZyme | HRGMv2_2774_14 | HRGMv2_2774_14_32 | 39016 | 40011 | - | GT2 |
| CAZyme | HRGMv2_2774_14 | HRGMv2_2774_14_33 | 40024 | 41025 | - | GT2 |
| CAZyme | HRGMv2_2774_14 | HRGMv2_2774_14_34 | 41052 | 42017 | - | GT2 |
Gene ID: HRGMv2_2774_14_30
Type: TC
Location: 37111 - 37692 (-)
Type: TC
Location: 37111 - 37692 (-)
Gene ID: HRGMv2_2774_14_31
Type: CAZyme
Location: 38013 - 39002 (-)
Type: CAZyme
Location: 38013 - 39002 (-)
Gene ID: HRGMv2_2774_14_32
Type: CAZyme
Location: 39016 - 40011 (-)
Type: CAZyme
Location: 39016 - 40011 (-)
Gene ID: HRGMv2_2774_14_33
Type: CAZyme
Location: 40024 - 41025 (-)
Type: CAZyme
Location: 40024 - 41025 (-)
Gene ID: HRGMv2_2774_14_34
Type: CAZyme
Location: 41052 - 42017 (-)
Type: CAZyme
Location: 41052 - 42017 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp900539885
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2774_14_32 | vegan > omnivore | 2.03295 | 0.00229 |
| HRGMv2_2774_14_32 | vegetarian > omnivore | 2.10758 | 0.00560 |
| HRGMv2_2774_14_33 | vegan > omnivore | 1.67354 | 0.00229 |
| HRGMv2_2774_14_33 | vegetarian > omnivore | 1.41723 | 0.00560 |