Cluster: HRGMv2_2772_CGC28
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2772
- CGC Family ID: CGCFAM_01236
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2772_1 | HRGMv2_2772_1_2256 | 2466980 | 2468455 | - | GH32 |
| STP | HRGMv2_2772_1 | HRGMv2_2772_1_2257 | 2468480 | 2470150 | - | SBP_bac_1 |
| TC | HRGMv2_2772_1 | HRGMv2_2772_1_2258 | 2470227 | 2471132 | - | 3.A.1.1.10 |
| TC | HRGMv2_2772_1 | HRGMv2_2772_1_2259 | 2471146 | 2472093 | - | 3.A.1.1.10 |
| TF | HRGMv2_2772_1 | HRGMv2_2772_1_2260 | 2472461 | 2473516 | + | LacI |
| TC | HRGMv2_2772_1 | HRGMv2_2772_1_2261 | 2473534 | 2474184 | + | 9.B.28.1.2 |
| NULL(UNKNOWN) | HRGMv2_2772_1 | HRGMv2_2772_1_2262 | 2474147 | 2474788 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_2772_1 | HRGMv2_2772_1_2263 | 2474825 | 2475757 | + | PfkB |
| CAZyme | HRGMv2_2772_1 | HRGMv2_2772_1_2264 | 2475761 | 2477593 | + | GH13_4 |
| pfam | HRGMv2_2772_1 | HRGMv2_2772_1_2265 | 2477806 | 2481009 | - | Beta_helix_3 | Beta_helix_3 | Beta_helix_3 | Beta_helix_3 |
| TC | HRGMv2_2772_1 | HRGMv2_2772_1_2266 | 2481235 | 2482179 | - | 2.A.28.2.4 |
Gene ID: HRGMv2_2772_1_2256
Type: CAZyme
Location: 2466980 - 2468455 (-)
Type: CAZyme
Location: 2466980 - 2468455 (-)
Gene ID: HRGMv2_2772_1_2257
Type: STP
Location: 2468480 - 2470150 (-)
Type: STP
Location: 2468480 - 2470150 (-)
Gene ID: HRGMv2_2772_1_2258
Type: TC
Location: 2470227 - 2471132 (-)
Type: TC
Location: 2470227 - 2471132 (-)
Gene ID: HRGMv2_2772_1_2259
Type: TC
Location: 2471146 - 2472093 (-)
Type: TC
Location: 2471146 - 2472093 (-)
Gene ID: HRGMv2_2772_1_2260
Type: TF
Location: 2472461 - 2473516 (+)
Type: TF
Location: 2472461 - 2473516 (+)
Gene ID: HRGMv2_2772_1_2261
Type: TC
Location: 2473534 - 2474184 (+)
Type: TC
Location: 2473534 - 2474184 (+)
Gene ID: HRGMv2_2772_1_2262
Type:
Location: 2474147 - 2474788 (+)
Type:
Location: 2474147 - 2474788 (+)
Gene ID: HRGMv2_2772_1_2263
Type: STP
Location: 2474825 - 2475757 (+)
Type: STP
Location: 2474825 - 2475757 (+)
Gene ID: HRGMv2_2772_1_2264
Type: CAZyme
Location: 2475761 - 2477593 (+)
Type: CAZyme
Location: 2475761 - 2477593 (+)
Gene ID: HRGMv2_2772_1_2265
Type: pfam
Location: 2477806 - 2481009 (-)
Type: pfam
Location: 2477806 - 2481009 (-)
Gene ID: HRGMv2_2772_1_2266
Type: TC
Location: 2481235 - 2482179 (-)
Type: TC
Location: 2481235 - 2482179 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.