Cluster: HRGMv2_2772_CGC15
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_2772
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2772_1 | HRGMv2_2772_1_615 | 695405 | 696271 | - | 3.A.1.1.48 |
| TC | HRGMv2_2772_1 | HRGMv2_2772_1_616 | 696274 | 697245 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | HRGMv2_2772_1 | HRGMv2_2772_1_617 | 697348 | 698784 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2772_1 | HRGMv2_2772_1_618 | 698870 | 699877 | - | LacI |
| CAZyme | HRGMv2_2772_1 | HRGMv2_2772_1_619 | 700397 | 702832 | + | GH94 |
| peptidase | HRGMv2_2772_1 | HRGMv2_2772_1_620 | 703107 | 704255 | - | M20.UPW |
| CAZyme | HRGMv2_2772_1 | HRGMv2_2772_1_621 | 704324 | 705793 | - | GH1 |
| TC | HRGMv2_2772_1 | HRGMv2_2772_1_622 | 705811 | 707190 | - | 4.A.1.2.11 |
| TF | HRGMv2_2772_1 | HRGMv2_2772_1_623 | 707391 | 708383 | + | 0035607 |
| pfam | HRGMv2_2772_1 | HRGMv2_2772_1_624 | 708764 | 710353 | - | Resolvase | Recombinase | Zn_ribbon_recom |
| CAZyme | HRGMv2_2772_1 | HRGMv2_2772_1_625 | 710751 | 713765 | - | GH2 |
| CAZyme | HRGMv2_2772_1 | HRGMv2_2772_1_626 | 713861 | 715549 | - | GH154 |
| CAZyme | HRGMv2_2772_1 | HRGMv2_2772_1_627 | 715549 | 716712 | - | GH88 |
| CAZyme | HRGMv2_2772_1 | HRGMv2_2772_1_628 | 716715 | 718511 | - | GH2 |
| TC | HRGMv2_2772_1 | HRGMv2_2772_1_629 | 718585 | 719445 | - | 3.A.1.1.11 |
| TC | HRGMv2_2772_1 | HRGMv2_2772_1_630 | 719463 | 720389 | - | 3.A.1.1.20 |
| TC | HRGMv2_2772_1 | HRGMv2_2772_1_631 | 720566 | 721885 | - | 3.A.1.1.44 |
| TC | HRGMv2_2772_1 | HRGMv2_2772_1_632 | 722230 | 724047 | + | 8.A.59.2.1 |
| TF | HRGMv2_2772_1 | HRGMv2_2772_1_633 | 724022 | 725284 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2772_1 | HRGMv2_2772_1_634 | 725299 | 727095 | + | PL33_1 |
Gene ID: HRGMv2_2772_1_615
Type: TC
Location: 695405 - 696271 (-)
Type: TC
Location: 695405 - 696271 (-)
Gene ID: HRGMv2_2772_1_616
Type: TC
Location: 696274 - 697245 (-)
Type: TC
Location: 696274 - 697245 (-)
Gene ID: HRGMv2_2772_1_617
Type:
Location: 697348 - 698784 (-)
Type:
Location: 697348 - 698784 (-)
Gene ID: HRGMv2_2772_1_618
Type: TF
Location: 698870 - 699877 (-)
Type: TF
Location: 698870 - 699877 (-)
Gene ID: HRGMv2_2772_1_619
Type: CAZyme
Location: 700397 - 702832 (+)
Type: CAZyme
Location: 700397 - 702832 (+)
Gene ID: HRGMv2_2772_1_620
Type: peptidase
Location: 703107 - 704255 (-)
Type: peptidase
Location: 703107 - 704255 (-)
Gene ID: HRGMv2_2772_1_621
Type: CAZyme
Location: 704324 - 705793 (-)
Type: CAZyme
Location: 704324 - 705793 (-)
Gene ID: HRGMv2_2772_1_622
Type: TC
Location: 705811 - 707190 (-)
Type: TC
Location: 705811 - 707190 (-)
Gene ID: HRGMv2_2772_1_623
Type: TF
Location: 707391 - 708383 (+)
Type: TF
Location: 707391 - 708383 (+)
Gene ID: HRGMv2_2772_1_624
Type: pfam
Location: 708764 - 710353 (-)
Type: pfam
Location: 708764 - 710353 (-)
Gene ID: HRGMv2_2772_1_625
Type: CAZyme
Location: 710751 - 713765 (-)
Type: CAZyme
Location: 710751 - 713765 (-)
Gene ID: HRGMv2_2772_1_626
Type: CAZyme
Location: 713861 - 715549 (-)
Type: CAZyme
Location: 713861 - 715549 (-)
Gene ID: HRGMv2_2772_1_627
Type: CAZyme
Location: 715549 - 716712 (-)
Type: CAZyme
Location: 715549 - 716712 (-)
Gene ID: HRGMv2_2772_1_628
Type: CAZyme
Location: 716715 - 718511 (-)
Type: CAZyme
Location: 716715 - 718511 (-)
Gene ID: HRGMv2_2772_1_629
Type: TC
Location: 718585 - 719445 (-)
Type: TC
Location: 718585 - 719445 (-)
Gene ID: HRGMv2_2772_1_630
Type: TC
Location: 719463 - 720389 (-)
Type: TC
Location: 719463 - 720389 (-)
Gene ID: HRGMv2_2772_1_631
Type: TC
Location: 720566 - 721885 (-)
Type: TC
Location: 720566 - 721885 (-)
Gene ID: HRGMv2_2772_1_632
Type: TC
Location: 722230 - 724047 (+)
Type: TC
Location: 722230 - 724047 (+)
Gene ID: HRGMv2_2772_1_633
Type: TF
Location: 724022 - 725284 (+)
Type: TF
Location: 724022 - 725284 (+)
Gene ID: HRGMv2_2772_1_634
Type: CAZyme
Location: 725299 - 727095 (+)
Type: CAZyme
Location: 725299 - 727095 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2772_1_623 | vegetarian > vegan | 1.44180 | 0.00289 |