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Cluster: HRGMv2_2755_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2755_14 HRGMv2_2755_14_3 2963 4366 + 3.A.1.1.45
TC HRGMv2_2755_14 HRGMv2_2755_14_4 4672 5577 + 3.A.1.1.45
TC HRGMv2_2755_14 HRGMv2_2755_14_5 5577 6434 + 3.A.1.1.45
TF HRGMv2_2755_14 HRGMv2_2755_14_6 6480 7493 + LacI
CAZyme HRGMv2_2755_14 HRGMv2_2755_14_7 7500 8978 + GH77
CAZyme HRGMv2_2755_14 HRGMv2_2755_14_8 9167 11503 + GT35
Gene ID: HRGMv2_2755_14_3
Type: TC
Location: 2963 - 4366 (+)
Gene ID: HRGMv2_2755_14_4
Type: TC
Location: 4672 - 5577 (+)
Gene ID: HRGMv2_2755_14_5
Type: TC
Location: 5577 - 6434 (+)
Gene ID: HRGMv2_2755_14_6
Type: TF
Location: 6480 - 7493 (+)
Gene ID: HRGMv2_2755_14_7
Type: CAZyme
Location: 7500 - 8978 (+)
Gene ID: HRGMv2_2755_14_8
Type: CAZyme
Location: 9167 - 11503 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2755_14_6 vegetarian > omnivore 3.03964 0.00229
HRGMv2_2755_14_6 vegetarian > vegan 2.80140 0.00065

🧭 Explore Read Mapping of CGC

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