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Cluster: HRGMv2_2755_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2755_12 HRGMv2_2755_12_13 15240 16484 - 3.B.1.1.3
TC HRGMv2_2755_12 HRGMv2_2755_12_14 16497 16898 - 3.B.1.1.3
pfam HRGMv2_2755_12 HRGMv2_2755_12_15 16901 17254 - OAD_gamma
TC HRGMv2_2755_12 HRGMv2_2755_12_16 17267 18667 - 3.B.1.1.6
pfam HRGMv2_2755_12 HRGMv2_2755_12_17 18977 20581 - PEPCK_ATP
pfam HRGMv2_2755_12 HRGMv2_2755_12_18 20999 21850 + DAP_epimerase | DAP_epimerase
TC HRGMv2_2755_12 HRGMv2_2755_12_19 21872 23158 + 2.A.23.3.1
CAZyme HRGMv2_2755_12 HRGMv2_2755_12_20 23226 24488 - GT2
Gene ID: HRGMv2_2755_12_13
Type: TC
Location: 15240 - 16484 (-)
Gene ID: HRGMv2_2755_12_14
Type: TC
Location: 16497 - 16898 (-)
Gene ID: HRGMv2_2755_12_15
Type: pfam
Location: 16901 - 17254 (-)
Gene ID: HRGMv2_2755_12_16
Type: TC
Location: 17267 - 18667 (-)
Gene ID: HRGMv2_2755_12_17
Type: pfam
Location: 18977 - 20581 (-)
Gene ID: HRGMv2_2755_12_18
Type: pfam
Location: 20999 - 21850 (+)
Gene ID: HRGMv2_2755_12_19
Type: TC
Location: 21872 - 23158 (+)
Gene ID: HRGMv2_2755_12_20
Type: CAZyme
Location: 23226 - 24488 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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