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Cluster: HRGMv2_2755_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2755_6 HRGMv2_2755_6_45 47297 48664 + 2.A.66.1.13
STP HRGMv2_2755_6 HRGMv2_2755_6_46 48771 49907 + HATPase_c | HisKA
TF HRGMv2_2755_6 HRGMv2_2755_6_47 49876 50583 + Trans_reg_C
CAZyme HRGMv2_2755_6 HRGMv2_2755_6_48 50670 52490 - GH13_39
CAZyme HRGMv2_2755_6 HRGMv2_2755_6_49 52503 54914 - GT35
CAZyme HRGMv2_2755_6 HRGMv2_2755_6_50 54923 56359 - GT5
pfam HRGMv2_2755_6 HRGMv2_2755_6_51 56356 57468 - NTP_transferase | Hexapep_GlmU
pfam HRGMv2_2755_6 HRGMv2_2755_6_52 57494 58678 - NTP_transferase | Hexapep_GlmU
CAZyme HRGMv2_2755_6 HRGMv2_2755_6_53 58748 60634 - CBM48 | GH13_9
TF HRGMv2_2755_6 HRGMv2_2755_6_54 60904 61764 + HTH_3
TF HRGMv2_2755_6 HRGMv2_2755_6_55 61865 62701 + HTH_AraC | HTH_AraC
TC HRGMv2_2755_6 HRGMv2_2755_6_56 62834 64291 + 2.A.37.3.3
Gene ID: HRGMv2_2755_6_45
Type: TC
Location: 47297 - 48664 (+)
Gene ID: HRGMv2_2755_6_46
Type: STP
Location: 48771 - 49907 (+)
Gene ID: HRGMv2_2755_6_47
Type: TF
Location: 49876 - 50583 (+)
Gene ID: HRGMv2_2755_6_48
Type: CAZyme
Location: 50670 - 52490 (-)
Gene ID: HRGMv2_2755_6_49
Type: CAZyme
Location: 52503 - 54914 (-)
Gene ID: HRGMv2_2755_6_50
Type: CAZyme
Location: 54923 - 56359 (-)
Gene ID: HRGMv2_2755_6_51
Type: pfam
Location: 56356 - 57468 (-)
Gene ID: HRGMv2_2755_6_52
Type: pfam
Location: 57494 - 58678 (-)
Gene ID: HRGMv2_2755_6_53
Type: CAZyme
Location: 58748 - 60634 (-)
Gene ID: HRGMv2_2755_6_54
Type: TF
Location: 60904 - 61764 (+)
Gene ID: HRGMv2_2755_6_55
Type: TF
Location: 61865 - 62701 (+)
Gene ID: HRGMv2_2755_6_56
Type: TC
Location: 62834 - 64291 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2755_6_46 vegetarian > vegan 1.09911 0.00065
HRGMv2_2755_6_50 vegetarian > vegan 1.03521 0.00065
HRGMv2_2755_6_51 vegetarian > vegan 1.39504 0.00065

🧭 Explore Read Mapping of CGC

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