Cluster: HRGMv2_2755_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2755
- CGC Family ID: CGCFAM_00532
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2755_1 | HRGMv2_2755_1_299 | 322959 | 324242 | - | CE4 |
| pfam | HRGMv2_2755_1 | HRGMv2_2755_1_300 | 324375 | 326174 | - | ABC2_membrane_2 |
| TC | HRGMv2_2755_1 | HRGMv2_2755_1_301 | 326128 | 327015 | - | 3.A.1.105.1 |
Gene ID: HRGMv2_2755_1_299
Type: CAZyme
Location: 322959 - 324242 (-)
Type: CAZyme
Location: 322959 - 324242 (-)
Gene ID: HRGMv2_2755_1_300
Type: pfam
Location: 324375 - 326174 (-)
Type: pfam
Location: 324375 - 326174 (-)
Gene ID: HRGMv2_2755_1_301
Type: TC
Location: 326128 - 327015 (-)
Type: TC
Location: 326128 - 327015 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900548625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2755_1_299 | vegetarian > omnivore | 1.90655 | 0.00229 |
| HRGMv2_2755_1_299 | vegetarian > vegan | 2.82028 | 0.00065 |
| HRGMv2_2755_1_301 | vegetarian > omnivore | 1.26004 | 0.00229 |