Cluster: HRGMv2_2755_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2755
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2755_1 | HRGMv2_2755_1_198 | 223603 | 224850 | - | 2.A.23.1.5 |
| CAZyme | HRGMv2_2755_1 | HRGMv2_2755_1_199 | 225119 | 226456 | - | GT4 |
| TC | HRGMv2_2755_1 | HRGMv2_2755_1_200 | 226810 | 228099 | - | 2.A.37.3.3 |
| pfam | HRGMv2_2755_1 | HRGMv2_2755_1_201 | 228260 | 228892 | - | PRK | Zeta_toxin | AAA_18 |
| TC | HRGMv2_2755_1 | HRGMv2_2755_1_202 | 229010 | 229951 | - | 3.A.1.2.12 |
| TC | HRGMv2_2755_1 | HRGMv2_2755_1_203 | 229951 | 231084 | - | 3.A.1.2.17 |
| TC | HRGMv2_2755_1 | HRGMv2_2755_1_204 | 231081 | 232622 | - | 3.A.1.2.12 |
| TF | HRGMv2_2755_1 | HRGMv2_2755_1_205 | 233016 | 234095 | + | 0043758 |
| pfam | HRGMv2_2755_1 | HRGMv2_2755_1_206 | 234099 | 234680 | + | GrpE |
| TC | HRGMv2_2755_1 | HRGMv2_2755_1_207 | 234759 | 236594 | + | 1.A.33.1.4 |
| sulfatase | HRGMv2_2755_1 | HRGMv2_2755_1_208 | 236672 | 237823 | + | S1_7 |
| TC | HRGMv2_2755_1 | HRGMv2_2755_1_209 | 237940 | 240054 | - | 3.A.1.134.4 |
| TC | HRGMv2_2755_1 | HRGMv2_2755_1_210 | 240047 | 240814 | - | 3.A.1.134.10 |
Gene ID: HRGMv2_2755_1_198
Type: TC
Location: 223603 - 224850 (-)
Type: TC
Location: 223603 - 224850 (-)
Gene ID: HRGMv2_2755_1_199
Type: CAZyme
Location: 225119 - 226456 (-)
Type: CAZyme
Location: 225119 - 226456 (-)
Gene ID: HRGMv2_2755_1_200
Type: TC
Location: 226810 - 228099 (-)
Type: TC
Location: 226810 - 228099 (-)
Gene ID: HRGMv2_2755_1_201
Type: pfam
Location: 228260 - 228892 (-)
Type: pfam
Location: 228260 - 228892 (-)
Gene ID: HRGMv2_2755_1_202
Type: TC
Location: 229010 - 229951 (-)
Type: TC
Location: 229010 - 229951 (-)
Gene ID: HRGMv2_2755_1_203
Type: TC
Location: 229951 - 231084 (-)
Type: TC
Location: 229951 - 231084 (-)
Gene ID: HRGMv2_2755_1_204
Type: TC
Location: 231081 - 232622 (-)
Type: TC
Location: 231081 - 232622 (-)
Gene ID: HRGMv2_2755_1_205
Type: TF
Location: 233016 - 234095 (+)
Type: TF
Location: 233016 - 234095 (+)
Gene ID: HRGMv2_2755_1_206
Type: pfam
Location: 234099 - 234680 (+)
Type: pfam
Location: 234099 - 234680 (+)
Gene ID: HRGMv2_2755_1_207
Type: TC
Location: 234759 - 236594 (+)
Type: TC
Location: 234759 - 236594 (+)
Gene ID: HRGMv2_2755_1_208
Type: sulfatase
Location: 236672 - 237823 (+)
Type: sulfatase
Location: 236672 - 237823 (+)
Gene ID: HRGMv2_2755_1_209
Type: TC
Location: 237940 - 240054 (-)
Type: TC
Location: 237940 - 240054 (-)
Gene ID: HRGMv2_2755_1_210
Type: TC
Location: 240047 - 240814 (-)
Type: TC
Location: 240047 - 240814 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900548625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2755_1_199 | vegetarian > vegan | 1.75976 | 0.00065 |
| HRGMv2_2755_1_200 | vegetarian > vegan | 1.88953 | 0.00065 |
| HRGMv2_2755_1_201 | vegetarian > vegan | 1.29603 | 0.00065 |
| HRGMv2_2755_1_202 | vegetarian > vegan | 1.14897 | 0.00065 |
| HRGMv2_2755_1_205 | vegetarian > vegan | 1.21614 | 0.00065 |
| HRGMv2_2755_1_206 | vegetarian > omnivore | 1.49124 | 0.00229 |
| HRGMv2_2755_1_206 | vegetarian > vegan | 1.86544 | 0.00065 |