Cluster: HRGMv2_2755_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2755
- CGC Family ID: CGCFAM_00409
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2755_28 | HRGMv2_2755_28_14 | 12831 | 14273 | - | 9.B.160.1.10 |
| STP | HRGMv2_2755_28 | HRGMv2_2755_28_15 | 14375 | 15808 | - | HATPase_c | HisKA |
| TF | HRGMv2_2755_28 | HRGMv2_2755_28_16 | 15811 | 16500 | - | Trans_reg_C |
| CAZyme | HRGMv2_2755_28 | HRGMv2_2755_28_17 | 16708 | 18810 | + | GH3 |
Gene ID: HRGMv2_2755_28_14
Type: TC
Location: 12831 - 14273 (-)
Type: TC
Location: 12831 - 14273 (-)
Gene ID: HRGMv2_2755_28_15
Type: STP
Location: 14375 - 15808 (-)
Type: STP
Location: 14375 - 15808 (-)
Gene ID: HRGMv2_2755_28_16
Type: TF
Location: 15811 - 16500 (-)
Type: TF
Location: 15811 - 16500 (-)
Gene ID: HRGMv2_2755_28_17
Type: CAZyme
Location: 16708 - 18810 (+)
Type: CAZyme
Location: 16708 - 18810 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900548625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2755_28_17 | vegetarian > omnivore | 2.52868 | 0.00229 |
| HRGMv2_2755_28_17 | vegetarian > vegan | 3.87056 | 0.00065 |