Cluster: HRGMv2_2748_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2748
- CGC Family ID: CGCFAM_01317
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_327 | 321910 | 322896 | + | 3.A.1.132.4 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_328 | 322893 | 323756 | + | 3.A.1.132.1 |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_329 | 323772 | 325193 | + | ABC_transp_aux |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_330 | 325203 | 326246 | + | DUF4340 | DUF4340 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_331 | 326550 | 327710 | + | GH3 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_332 | 327703 | 328755 | + | GT4 |
Gene ID: HRGMv2_2748_1_327
Type: TC
Location: 321910 - 322896 (+)
Type: TC
Location: 321910 - 322896 (+)
Gene ID: HRGMv2_2748_1_328
Type: TC
Location: 322893 - 323756 (+)
Type: TC
Location: 322893 - 323756 (+)
Gene ID: HRGMv2_2748_1_329
Type: pfam
Location: 323772 - 325193 (+)
Type: pfam
Location: 323772 - 325193 (+)
Gene ID: HRGMv2_2748_1_330
Type: pfam
Location: 325203 - 326246 (+)
Type: pfam
Location: 325203 - 326246 (+)
Gene ID: HRGMv2_2748_1_331
Type: CAZyme
Location: 326550 - 327710 (+)
Type: CAZyme
Location: 326550 - 327710 (+)
Gene ID: HRGMv2_2748_1_332
Type: CAZyme
Location: 327703 - 328755 (+)
Type: CAZyme
Location: 327703 - 328755 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900540595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.