Cluster: HRGMv2_2748_CGC35
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2748
- CGC Family ID: CGCFAM_04690
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2314 | 2523145 | 2524056 | - | 3.A.1.1.10 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2315 | 2524086 | 2525027 | - | 3.A.1.1.10 |
| NULL(UNKNOWN) | HRGMv2_2748_1 | HRGMv2_2748_1_2316 | 2525286 | 2527172 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2317 | 2527169 | 2529037 | + | GH20 |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_2318 | 2529066 | 2530349 | + | GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2319 | 2530372 | 2532852 | + | GH3 |
Gene ID: HRGMv2_2748_1_2314
Type: TC
Location: 2523145 - 2524056 (-)
Type: TC
Location: 2523145 - 2524056 (-)
Gene ID: HRGMv2_2748_1_2315
Type: TC
Location: 2524086 - 2525027 (-)
Type: TC
Location: 2524086 - 2525027 (-)
Gene ID: HRGMv2_2748_1_2316
Type:
Location: 2525286 - 2527172 (+)
Type:
Location: 2525286 - 2527172 (+)
Gene ID: HRGMv2_2748_1_2317
Type: CAZyme
Location: 2527169 - 2529037 (+)
Type: CAZyme
Location: 2527169 - 2529037 (+)
Gene ID: HRGMv2_2748_1_2318
Type: pfam
Location: 2529066 - 2530349 (+)
Type: pfam
Location: 2529066 - 2530349 (+)
Gene ID: HRGMv2_2748_1_2319
Type: CAZyme
Location: 2530372 - 2532852 (+)
Type: CAZyme
Location: 2530372 - 2532852 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900540595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.