Cluster: HRGMv2_2748_CGC33
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2748
- CGC Family ID: CGCFAM_03554
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2154 | 2322121 | 2323473 | + | GH28 |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_2155 | 2323668 | 2323985 | + | rhaM |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2156 | 2324063 | 2325112 | - | GH105 |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_2157 | 2325143 | 2325955 | - | Polysacc_deac_1 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2158 | 2325983 | 2329135 | - | CE12 | PL11 |
| NULL(UNKNOWN) | HRGMv2_2748_1 | HRGMv2_2748_1_2159 | 2329194 | 2330771 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2160 | 2330818 | 2331750 | - | 3.A.1.1.29 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2161 | 2331770 | 2332759 | - | 3.A.1.1.10 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2162 | 2333340 | 2336606 | + | GH2 |
| TF | HRGMv2_2748_1 | HRGMv2_2748_1_2163 | 2336670 | 2338973 | - | HTH_AraC |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_2164 | 2339297 | 2340670 | + | MatE | MatE |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2165 | 2340670 | 2342757 | + | GH106 |
Gene ID: HRGMv2_2748_1_2154
Type: CAZyme
Location: 2322121 - 2323473 (+)
Type: CAZyme
Location: 2322121 - 2323473 (+)
Gene ID: HRGMv2_2748_1_2155
Type: pfam
Location: 2323668 - 2323985 (+)
Type: pfam
Location: 2323668 - 2323985 (+)
Gene ID: HRGMv2_2748_1_2156
Type: CAZyme
Location: 2324063 - 2325112 (-)
Type: CAZyme
Location: 2324063 - 2325112 (-)
Gene ID: HRGMv2_2748_1_2157
Type: pfam
Location: 2325143 - 2325955 (-)
Type: pfam
Location: 2325143 - 2325955 (-)
Gene ID: HRGMv2_2748_1_2158
Type: CAZyme
Location: 2325983 - 2329135 (-)
Type: CAZyme
Location: 2325983 - 2329135 (-)
Gene ID: HRGMv2_2748_1_2159
Type:
Location: 2329194 - 2330771 (-)
Type:
Location: 2329194 - 2330771 (-)
Gene ID: HRGMv2_2748_1_2160
Type: TC
Location: 2330818 - 2331750 (-)
Type: TC
Location: 2330818 - 2331750 (-)
Gene ID: HRGMv2_2748_1_2161
Type: TC
Location: 2331770 - 2332759 (-)
Type: TC
Location: 2331770 - 2332759 (-)
Gene ID: HRGMv2_2748_1_2162
Type: CAZyme
Location: 2333340 - 2336606 (+)
Type: CAZyme
Location: 2333340 - 2336606 (+)
Gene ID: HRGMv2_2748_1_2163
Type: TF
Location: 2336670 - 2338973 (-)
Type: TF
Location: 2336670 - 2338973 (-)
Gene ID: HRGMv2_2748_1_2164
Type: pfam
Location: 2339297 - 2340670 (+)
Type: pfam
Location: 2339297 - 2340670 (+)
Gene ID: HRGMv2_2748_1_2165
Type: CAZyme
Location: 2340670 - 2342757 (+)
Type: CAZyme
Location: 2340670 - 2342757 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900540595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2748_1_2154 | vegan > omnivore | 1.20886 | 0.00454 |
| HRGMv2_2748_1_2156 | vegan > omnivore | 1.31425 | 0.00739 |
| HRGMv2_2748_1_2157 | vegan > omnivore | 1.62388 | 0.00454 |
| HRGMv2_2748_1_2157 | vegetarian > omnivore | 1.81916 | 0.00364 |
| HRGMv2_2748_1_2158 | vegan > omnivore | 1.07026 | 0.00739 |
| HRGMv2_2748_1_2158 | vegetarian > omnivore | 1.20897 | 0.00364 |
| HRGMv2_2748_1_2159 | vegan > omnivore | 1.07931 | 0.00739 |
| HRGMv2_2748_1_2159 | vegetarian > omnivore | 1.08637 | 0.00364 |
| HRGMv2_2748_1_2160 | vegan > omnivore | 1.00425 | 0.00739 |
| HRGMv2_2748_1_2160 | vegetarian > omnivore | 1.08941 | 0.00364 |
| HRGMv2_2748_1_2162 | vegan > omnivore | 1.06363 | 0.00739 |
| HRGMv2_2748_1_2162 | vegetarian > omnivore | 1.40720 | 0.00364 |
| HRGMv2_2748_1_2163 | vegetarian > omnivore | 1.19351 | 0.00364 |
| HRGMv2_2748_1_2164 | vegan > omnivore | 1.17474 | 0.00739 |
| HRGMv2_2748_1_2164 | vegetarian > omnivore | 1.52179 | 0.00364 |
| HRGMv2_2748_1_2165 | vegetarian > omnivore | 1.41204 | 0.00364 |
| HRGMv2_2748_1_2165 | vegan > omnivore | 1.15037 | 0.00739 |