Cluster: HRGMv2_2748_CGC32
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2748
- CGC Family ID: CGCFAM_00990
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2140 | 2301518 | 2303272 | - | PL37 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2141 | 2303276 | 2305186 | - | GH154 |
| NULL(UNKNOWN) | HRGMv2_2748_1 | HRGMv2_2748_1_2142 | 2305244 | 2305585 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2143 | 2305536 | 2306387 | - | GH88 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2144 | 2306400 | 2307299 | - | 3.A.1.1.10 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2145 | 2307312 | 2308277 | - | 3.A.1.1.10 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2146 | 2308356 | 2310005 | - | 3.A.1.1.10 |
| TF | HRGMv2_2748_1 | HRGMv2_2748_1_2147 | 2310350 | 2312611 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2148 | 2312649 | 2315399 | - | GH3 |
Gene ID: HRGMv2_2748_1_2140
Type: CAZyme
Location: 2301518 - 2303272 (-)
Type: CAZyme
Location: 2301518 - 2303272 (-)
Gene ID: HRGMv2_2748_1_2141
Type: CAZyme
Location: 2303276 - 2305186 (-)
Type: CAZyme
Location: 2303276 - 2305186 (-)
Gene ID: HRGMv2_2748_1_2142
Type:
Location: 2305244 - 2305585 (-)
Type:
Location: 2305244 - 2305585 (-)
Gene ID: HRGMv2_2748_1_2143
Type: CAZyme
Location: 2305536 - 2306387 (-)
Type: CAZyme
Location: 2305536 - 2306387 (-)
Gene ID: HRGMv2_2748_1_2144
Type: TC
Location: 2306400 - 2307299 (-)
Type: TC
Location: 2306400 - 2307299 (-)
Gene ID: HRGMv2_2748_1_2145
Type: TC
Location: 2307312 - 2308277 (-)
Type: TC
Location: 2307312 - 2308277 (-)
Gene ID: HRGMv2_2748_1_2146
Type: TC
Location: 2308356 - 2310005 (-)
Type: TC
Location: 2308356 - 2310005 (-)
Gene ID: HRGMv2_2748_1_2147
Type: TF
Location: 2310350 - 2312611 (-)
Type: TF
Location: 2310350 - 2312611 (-)
Gene ID: HRGMv2_2748_1_2148
Type: CAZyme
Location: 2312649 - 2315399 (-)
Type: CAZyme
Location: 2312649 - 2315399 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900540595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2748_1_2140 | vegetarian > omnivore | 2.87063 | 0.00364 |
| HRGMv2_2748_1_2140 | vegan > omnivore | 2.28650 | 0.00739 |
| HRGMv2_2748_1_2141 | vegan > omnivore | 2.25503 | 0.00739 |
| HRGMv2_2748_1_2141 | vegetarian > omnivore | 2.79169 | 0.00364 |
| HRGMv2_2748_1_2142 | vegan > omnivore | 3.02781 | 0.00454 |
| HRGMv2_2748_1_2142 | vegetarian > omnivore | 3.76698 | 0.00364 |
| HRGMv2_2748_1_2143 | vegetarian > omnivore | 1.91685 | 0.00364 |
| HRGMv2_2748_1_2143 | vegan > omnivore | 1.37745 | 0.00739 |
| HRGMv2_2748_1_2144 | vegetarian > omnivore | 3.19318 | 0.00364 |
| HRGMv2_2748_1_2144 | vegan > omnivore | 2.71734 | 0.00739 |
| HRGMv2_2748_1_2145 | vegetarian > omnivore | 3.11387 | 0.00364 |
| HRGMv2_2748_1_2145 | vegan > omnivore | 2.92436 | 0.00454 |
| HRGMv2_2748_1_2146 | vegetarian > omnivore | 2.61052 | 0.00364 |
| HRGMv2_2748_1_2146 | vegan > omnivore | 2.12490 | 0.00739 |
| HRGMv2_2748_1_2147 | vegetarian > omnivore | 2.74088 | 0.00364 |
| HRGMv2_2748_1_2147 | vegan > omnivore | 2.21647 | 0.00739 |
| HRGMv2_2748_1_2148 | vegetarian > omnivore | 1.08117 | 0.00364 |
| HRGMv2_2748_1_2148 | vegan > omnivore | 1.42280 | 0.00739 |