Cluster: HRGMv2_2748_CGC31
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_2748
- CGC Family ID: CGCFAM_02378
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2118 | 2269810 | 2271033 | - | GH78 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2119 | 2271049 | 2273379 | - | GH2 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2120 | 2273434 | 2275044 | - | GH39 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2121 | 2275049 | 2276470 | - | 2.A.2.3.7 |
| TF | HRGMv2_2748_1 | HRGMv2_2748_1_2122 | 2276607 | 2277815 | + | HTH_AraC |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2123 | 2277810 | 2279138 | - | GH1 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2124 | 2279152 | 2281509 | - | GH3 |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_2125 | 2283025 | 2283168 | + | SLFN_AlbA_2 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2126 | 2283409 | 2284302 | - | 3.A.1.1.48 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2127 | 2284321 | 2285298 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | HRGMv2_2748_1 | HRGMv2_2748_1_2128 | 2285437 | 2286894 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2748_1 | HRGMv2_2748_1_2129 | 2286971 | 2287987 | - | LacI |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2130 | 2288458 | 2290893 | + | GH94 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2131 | 2291166 | 2292521 | - | GH1 |
Gene ID: HRGMv2_2748_1_2118
Type: CAZyme
Location: 2269810 - 2271033 (-)
Type: CAZyme
Location: 2269810 - 2271033 (-)
Gene ID: HRGMv2_2748_1_2119
Type: CAZyme
Location: 2271049 - 2273379 (-)
Type: CAZyme
Location: 2271049 - 2273379 (-)
Gene ID: HRGMv2_2748_1_2120
Type: CAZyme
Location: 2273434 - 2275044 (-)
Type: CAZyme
Location: 2273434 - 2275044 (-)
Gene ID: HRGMv2_2748_1_2121
Type: TC
Location: 2275049 - 2276470 (-)
Type: TC
Location: 2275049 - 2276470 (-)
Gene ID: HRGMv2_2748_1_2122
Type: TF
Location: 2276607 - 2277815 (+)
Type: TF
Location: 2276607 - 2277815 (+)
Gene ID: HRGMv2_2748_1_2123
Type: CAZyme
Location: 2277810 - 2279138 (-)
Type: CAZyme
Location: 2277810 - 2279138 (-)
Gene ID: HRGMv2_2748_1_2124
Type: CAZyme
Location: 2279152 - 2281509 (-)
Type: CAZyme
Location: 2279152 - 2281509 (-)
Gene ID: HRGMv2_2748_1_2125
Type: pfam
Location: 2283025 - 2283168 (+)
Type: pfam
Location: 2283025 - 2283168 (+)
Gene ID: HRGMv2_2748_1_2126
Type: TC
Location: 2283409 - 2284302 (-)
Type: TC
Location: 2283409 - 2284302 (-)
Gene ID: HRGMv2_2748_1_2127
Type: TC
Location: 2284321 - 2285298 (-)
Type: TC
Location: 2284321 - 2285298 (-)
Gene ID: HRGMv2_2748_1_2128
Type:
Location: 2285437 - 2286894 (-)
Type:
Location: 2285437 - 2286894 (-)
Gene ID: HRGMv2_2748_1_2129
Type: TF
Location: 2286971 - 2287987 (-)
Type: TF
Location: 2286971 - 2287987 (-)
Gene ID: HRGMv2_2748_1_2130
Type: CAZyme
Location: 2288458 - 2290893 (+)
Type: CAZyme
Location: 2288458 - 2290893 (+)
Gene ID: HRGMv2_2748_1_2131
Type: CAZyme
Location: 2291166 - 2292521 (-)
Type: CAZyme
Location: 2291166 - 2292521 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900540595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.