Cluster: HRGMv2_2748_CGC29
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2748
- CGC Family ID: CGCFAM_07755
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2084 | 2232868 | 2233851 | + | 3.A.1.14.9 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2085 | 2233848 | 2234660 | + | 3.A.1.14.3 |
| TF | HRGMv2_2748_1 | HRGMv2_2748_1_2086 | 2234670 | 2235011 | + | HTH_1 |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_2087 | 2234953 | 2236047 | + | NTPase_1 | NTP_transf_3 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2088 | 2236139 | 2237428 | - | GH136 |
| NULL(UNKNOWN) | HRGMv2_2748_1 | HRGMv2_2748_1_2089 | 2237388 | 2237849 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2090 | 2237849 | 2238655 | - | 3.A.1.1.4 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2091 | 2238648 | 2239529 | - | 3.A.1.1.4 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2092 | 2239651 | 2241009 | - | 3.A.1.1.4 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2093 | 2241091 | 2243232 | - | GH112 |
| TF | HRGMv2_2748_1 | HRGMv2_2748_1_2094 | 2243668 | 2244513 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2095 | 2244652 | 2247414 | - | GH2 |
| NULL(UNKNOWN) | HRGMv2_2748_1 | HRGMv2_2748_1_2096 | 2247418 | 2248119 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2097 | 2248462 | 2249814 | + | GH28 |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_2098 | 2249833 | 2250150 | + | rhaM |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2099 | 2250228 | 2251277 | - | GH105 |
Gene ID: HRGMv2_2748_1_2084
Type: TC
Location: 2232868 - 2233851 (+)
Type: TC
Location: 2232868 - 2233851 (+)
Gene ID: HRGMv2_2748_1_2085
Type: TC
Location: 2233848 - 2234660 (+)
Type: TC
Location: 2233848 - 2234660 (+)
Gene ID: HRGMv2_2748_1_2086
Type: TF
Location: 2234670 - 2235011 (+)
Type: TF
Location: 2234670 - 2235011 (+)
Gene ID: HRGMv2_2748_1_2087
Type: pfam
Location: 2234953 - 2236047 (+)
Type: pfam
Location: 2234953 - 2236047 (+)
Gene ID: HRGMv2_2748_1_2088
Type: CAZyme
Location: 2236139 - 2237428 (-)
Type: CAZyme
Location: 2236139 - 2237428 (-)
Gene ID: HRGMv2_2748_1_2089
Type:
Location: 2237388 - 2237849 (-)
Type:
Location: 2237388 - 2237849 (-)
Gene ID: HRGMv2_2748_1_2090
Type: TC
Location: 2237849 - 2238655 (-)
Type: TC
Location: 2237849 - 2238655 (-)
Gene ID: HRGMv2_2748_1_2091
Type: TC
Location: 2238648 - 2239529 (-)
Type: TC
Location: 2238648 - 2239529 (-)
Gene ID: HRGMv2_2748_1_2092
Type: TC
Location: 2239651 - 2241009 (-)
Type: TC
Location: 2239651 - 2241009 (-)
Gene ID: HRGMv2_2748_1_2093
Type: CAZyme
Location: 2241091 - 2243232 (-)
Type: CAZyme
Location: 2241091 - 2243232 (-)
Gene ID: HRGMv2_2748_1_2094
Type: TF
Location: 2243668 - 2244513 (+)
Type: TF
Location: 2243668 - 2244513 (+)
Gene ID: HRGMv2_2748_1_2095
Type: CAZyme
Location: 2244652 - 2247414 (-)
Type: CAZyme
Location: 2244652 - 2247414 (-)
Gene ID: HRGMv2_2748_1_2096
Type:
Location: 2247418 - 2248119 (-)
Type:
Location: 2247418 - 2248119 (-)
Gene ID: HRGMv2_2748_1_2097
Type: CAZyme
Location: 2248462 - 2249814 (+)
Type: CAZyme
Location: 2248462 - 2249814 (+)
Gene ID: HRGMv2_2748_1_2098
Type: pfam
Location: 2249833 - 2250150 (+)
Type: pfam
Location: 2249833 - 2250150 (+)
Gene ID: HRGMv2_2748_1_2099
Type: CAZyme
Location: 2250228 - 2251277 (-)
Type: CAZyme
Location: 2250228 - 2251277 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900540595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2748_1_2096 | vegetarian > omnivore | 1.50655 | 0.00364 |
| HRGMv2_2748_1_2097 | vegetarian > omnivore | 1.12933 | 0.00364 |
| HRGMv2_2748_1_2099 | vegetarian > omnivore | 1.23988 | 0.00364 |