Cluster: HRGMv2_2748_CGC27
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2748
- CGC Family ID: CGCFAM_00466
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2023 | 2155514 | 2156890 | - | 2.A.2.1.1 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2024 | 2157194 | 2159989 | - | CBM67 | GH78 |
| peptidase | HRGMv2_2748_1 | HRGMv2_2748_1_2025 | 2160011 | 2161102 | - | S09.UPC |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_2026 | 2161746 | 2162528 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2027 | 2162641 | 2164896 | - | GH3 |
Gene ID: HRGMv2_2748_1_2023
Type: TC
Location: 2155514 - 2156890 (-)
Type: TC
Location: 2155514 - 2156890 (-)
Gene ID: HRGMv2_2748_1_2024
Type: CAZyme
Location: 2157194 - 2159989 (-)
Type: CAZyme
Location: 2157194 - 2159989 (-)
Gene ID: HRGMv2_2748_1_2025
Type: peptidase
Location: 2160011 - 2161102 (-)
Type: peptidase
Location: 2160011 - 2161102 (-)
Gene ID: HRGMv2_2748_1_2026
Type: pfam
Location: 2161746 - 2162528 (-)
Type: pfam
Location: 2161746 - 2162528 (-)
Gene ID: HRGMv2_2748_1_2027
Type: CAZyme
Location: 2162641 - 2164896 (-)
Type: CAZyme
Location: 2162641 - 2164896 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900540595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2748_1_2026 | vegetarian > omnivore | 1.00264 | 0.00364 |
| HRGMv2_2748_1_2027 | vegetarian > omnivore | 1.10251 | 0.00364 |