Cluster: HRGMv2_2748_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2748
- CGC Family ID: CGCFAM_04434
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1903 | 2029985 | 2030458 | - | 2.A.19.5.1 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1904 | 2030475 | 2030945 | - | 2.A.19.5.3 |
| TF | HRGMv2_2748_1 | HRGMv2_2748_1_1905 | 2031542 | 2031976 | + | MarR |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_1906 | 2031984 | 2032403 | + | Zn_Ribbon_1 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_1907 | 2032413 | 2033402 | + | GT2 |
Gene ID: HRGMv2_2748_1_1903
Type: TC
Location: 2029985 - 2030458 (-)
Type: TC
Location: 2029985 - 2030458 (-)
Gene ID: HRGMv2_2748_1_1904
Type: TC
Location: 2030475 - 2030945 (-)
Type: TC
Location: 2030475 - 2030945 (-)
Gene ID: HRGMv2_2748_1_1905
Type: TF
Location: 2031542 - 2031976 (+)
Type: TF
Location: 2031542 - 2031976 (+)
Gene ID: HRGMv2_2748_1_1906
Type: pfam
Location: 2031984 - 2032403 (+)
Type: pfam
Location: 2031984 - 2032403 (+)
Gene ID: HRGMv2_2748_1_1907
Type: CAZyme
Location: 2032413 - 2033402 (+)
Type: CAZyme
Location: 2032413 - 2033402 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900540595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.