Cluster: HRGMv2_2748_CGC20
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2748
- CGC Family ID: CGCFAM_00193
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_1578 | 1659117 | 1659704 | - | GH130_1 |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_1579 | 1659691 | 1660308 | - | GlcNAc_2-epim |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_1580 | 1660345 | 1660869 | - | GlcNAc_2-epim |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_1581 | 1660888 | 1661730 | - | GH130_2 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1582 | 1661929 | 1662801 | - | 3.A.1.1.47 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1583 | 1662816 | 1663823 | - | 3.A.1.1.20 |
| STP | HRGMv2_2748_1 | HRGMv2_2748_1_1584 | 1663900 | 1665324 | - | SBP_bac_1 |
| TF | HRGMv2_2748_1 | HRGMv2_2748_1_1585 | 1665606 | 1666613 | - | LacI |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_1586 | 1666801 | 1667727 | + | GH113 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_1587 | 1667724 | 1668848 | + | CE2 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_1588 | 1668845 | 1669912 | + | CBM35inCE17 | CE17 |
Gene ID: HRGMv2_2748_1_1578
Type: CAZyme
Location: 1659117 - 1659704 (-)
Type: CAZyme
Location: 1659117 - 1659704 (-)
Gene ID: HRGMv2_2748_1_1579
Type: pfam
Location: 1659691 - 1660308 (-)
Type: pfam
Location: 1659691 - 1660308 (-)
Gene ID: HRGMv2_2748_1_1580
Type: pfam
Location: 1660345 - 1660869 (-)
Type: pfam
Location: 1660345 - 1660869 (-)
Gene ID: HRGMv2_2748_1_1581
Type: CAZyme
Location: 1660888 - 1661730 (-)
Type: CAZyme
Location: 1660888 - 1661730 (-)
Gene ID: HRGMv2_2748_1_1582
Type: TC
Location: 1661929 - 1662801 (-)
Type: TC
Location: 1661929 - 1662801 (-)
Gene ID: HRGMv2_2748_1_1583
Type: TC
Location: 1662816 - 1663823 (-)
Type: TC
Location: 1662816 - 1663823 (-)
Gene ID: HRGMv2_2748_1_1584
Type: STP
Location: 1663900 - 1665324 (-)
Type: STP
Location: 1663900 - 1665324 (-)
Gene ID: HRGMv2_2748_1_1585
Type: TF
Location: 1665606 - 1666613 (-)
Type: TF
Location: 1665606 - 1666613 (-)
Gene ID: HRGMv2_2748_1_1586
Type: CAZyme
Location: 1666801 - 1667727 (+)
Type: CAZyme
Location: 1666801 - 1667727 (+)
Gene ID: HRGMv2_2748_1_1587
Type: CAZyme
Location: 1667724 - 1668848 (+)
Type: CAZyme
Location: 1667724 - 1668848 (+)
Gene ID: HRGMv2_2748_1_1588
Type: CAZyme
Location: 1668845 - 1669912 (+)
Type: CAZyme
Location: 1668845 - 1669912 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900540595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.