Cluster: HRGMv2_2748_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2748
- CGC Family ID: CGCFAM_00763
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1384 | 1433711 | 1435522 | - | 3.A.1.135.6 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1385 | 1435524 | 1436414 | - | 3.A.1.135.7 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1386 | 1436356 | 1437414 | - | 3.A.1.135.6 |
| TF | HRGMv2_2748_1 | HRGMv2_2748_1_1387 | 1437719 | 1438159 | - | MarR |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_1388 | 1438452 | 1439132 | - | GH28 |
Gene ID: HRGMv2_2748_1_1384
Type: TC
Location: 1433711 - 1435522 (-)
Type: TC
Location: 1433711 - 1435522 (-)
Gene ID: HRGMv2_2748_1_1385
Type: TC
Location: 1435524 - 1436414 (-)
Type: TC
Location: 1435524 - 1436414 (-)
Gene ID: HRGMv2_2748_1_1386
Type: TC
Location: 1436356 - 1437414 (-)
Type: TC
Location: 1436356 - 1437414 (-)
Gene ID: HRGMv2_2748_1_1387
Type: TF
Location: 1437719 - 1438159 (-)
Type: TF
Location: 1437719 - 1438159 (-)
Gene ID: HRGMv2_2748_1_1388
Type: CAZyme
Location: 1438452 - 1439132 (-)
Type: CAZyme
Location: 1438452 - 1439132 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900540595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.