Cluster: HRGMv2_2748_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2748
- CGC Family ID: CGCFAM_00679
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1210 | 1246693 | 1247532 | + | 3.A.1.3.10 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1211 | 1247687 | 1248454 | + | 3.A.1.3.20 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1212 | 1248441 | 1249157 | + | 3.A.1.3.25 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1213 | 1249420 | 1250298 | + | 3.A.1.103.5 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1214 | 1250312 | 1251589 | + | 3.A.1.103.5 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_1215 | 1251593 | 1252567 | + | GT100 |
Gene ID: HRGMv2_2748_1_1210
Type: TC
Location: 1246693 - 1247532 (+)
Type: TC
Location: 1246693 - 1247532 (+)
Gene ID: HRGMv2_2748_1_1211
Type: TC
Location: 1247687 - 1248454 (+)
Type: TC
Location: 1247687 - 1248454 (+)
Gene ID: HRGMv2_2748_1_1212
Type: TC
Location: 1248441 - 1249157 (+)
Type: TC
Location: 1248441 - 1249157 (+)
Gene ID: HRGMv2_2748_1_1213
Type: TC
Location: 1249420 - 1250298 (+)
Type: TC
Location: 1249420 - 1250298 (+)
Gene ID: HRGMv2_2748_1_1214
Type: TC
Location: 1250312 - 1251589 (+)
Type: TC
Location: 1250312 - 1251589 (+)
Gene ID: HRGMv2_2748_1_1215
Type: CAZyme
Location: 1251593 - 1252567 (+)
Type: CAZyme
Location: 1251593 - 1252567 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900540595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.