Cluster: HRGMv2_2748_CGC11
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2748
- CGC Family ID: CGCFAM_03125
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1035 | 1070462 | 1072234 | + | 3.A.1.106.2 |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_1036 | 1072372 | 1073688 | - | Polysacc_synt |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1037 | 1073969 | 1074793 | + | 3.A.1.132.3 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1038 | 1074913 | 1075335 | + | 1.A.22.1.3 |
| STP | HRGMv2_2748_1 | HRGMv2_2748_1_1039 | 1075940 | 1080490 | + | GATase_2 |
| STP | HRGMv2_2748_1 | HRGMv2_2748_1_1040 | 1080506 | 1081978 | + | Pyr_redox_2 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_1041 | 1082082 | 1083407 | - | GH13_20 |
| NULL(UNKNOWN) | HRGMv2_2748_1 | HRGMv2_2748_1_1042 | 1083426 | 1083965 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_1043 | 1084149 | 1084991 | - | CE4 |
| NULL(UNKNOWN) | HRGMv2_2748_1 | HRGMv2_2748_1_1044 | 1085104 | 1085532 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1045 | 1085647 | 1087122 | - | 2.A.38.1.1 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1046 | 1087133 | 1088497 | - | 2.A.38.1.1 |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_1047 | 1088816 | 1089100 | + | Ribosomal_S6 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_1048 | 1089112 | 1089588 | + | 3.A.7.19.1 |
Gene ID: HRGMv2_2748_1_1035
Type: TC
Location: 1070462 - 1072234 (+)
Type: TC
Location: 1070462 - 1072234 (+)
Gene ID: HRGMv2_2748_1_1036
Type: pfam
Location: 1072372 - 1073688 (-)
Type: pfam
Location: 1072372 - 1073688 (-)
Gene ID: HRGMv2_2748_1_1037
Type: TC
Location: 1073969 - 1074793 (+)
Type: TC
Location: 1073969 - 1074793 (+)
Gene ID: HRGMv2_2748_1_1038
Type: TC
Location: 1074913 - 1075335 (+)
Type: TC
Location: 1074913 - 1075335 (+)
Gene ID: HRGMv2_2748_1_1039
Type: STP
Location: 1075940 - 1080490 (+)
Type: STP
Location: 1075940 - 1080490 (+)
Gene ID: HRGMv2_2748_1_1040
Type: STP
Location: 1080506 - 1081978 (+)
Type: STP
Location: 1080506 - 1081978 (+)
Gene ID: HRGMv2_2748_1_1041
Type: CAZyme
Location: 1082082 - 1083407 (-)
Type: CAZyme
Location: 1082082 - 1083407 (-)
Gene ID: HRGMv2_2748_1_1042
Type:
Location: 1083426 - 1083965 (-)
Type:
Location: 1083426 - 1083965 (-)
Gene ID: HRGMv2_2748_1_1043
Type: CAZyme
Location: 1084149 - 1084991 (-)
Type: CAZyme
Location: 1084149 - 1084991 (-)
Gene ID: HRGMv2_2748_1_1044
Type:
Location: 1085104 - 1085532 (+)
Type:
Location: 1085104 - 1085532 (+)
Gene ID: HRGMv2_2748_1_1045
Type: TC
Location: 1085647 - 1087122 (-)
Type: TC
Location: 1085647 - 1087122 (-)
Gene ID: HRGMv2_2748_1_1046
Type: TC
Location: 1087133 - 1088497 (-)
Type: TC
Location: 1087133 - 1088497 (-)
Gene ID: HRGMv2_2748_1_1047
Type: pfam
Location: 1088816 - 1089100 (+)
Type: pfam
Location: 1088816 - 1089100 (+)
Gene ID: HRGMv2_2748_1_1048
Type: TC
Location: 1089112 - 1089588 (+)
Type: TC
Location: 1089112 - 1089588 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900540595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.