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Cluster: HRGMv2_2743_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2743_8 HRGMv2_2743_8_25 23985 24764 - CE4
TF HRGMv2_2743_8 HRGMv2_2743_8_26 24814 25560 - HTH_AraC | HTH_AraC
TC HRGMv2_2743_8 HRGMv2_2743_8_27 25554 27266 - 9.B.33.1.1
TC HRGMv2_2743_8 HRGMv2_2743_8_28 27916 29574 - 3.A.1.20.1
TC HRGMv2_2743_8 HRGMv2_2743_8_29 29571 30680 - 3.A.1.20.1
TC HRGMv2_2743_8 HRGMv2_2743_8_30 30774 31832 - 3.A.1.20.1
STP HRGMv2_2743_8 HRGMv2_2743_8_31 32058 33392 - HATPase_c | HisKA
TF HRGMv2_2743_8 HRGMv2_2743_8_32 33389 34072 - Trans_reg_C
TC HRGMv2_2743_8 HRGMv2_2743_8_33 34234 36000 + 2.A.58.2.2
Gene ID: HRGMv2_2743_8_25
Type: CAZyme
Location: 23985 - 24764 (-)
Gene ID: HRGMv2_2743_8_26
Type: TF
Location: 24814 - 25560 (-)
Gene ID: HRGMv2_2743_8_27
Type: TC
Location: 25554 - 27266 (-)
Gene ID: HRGMv2_2743_8_28
Type: TC
Location: 27916 - 29574 (-)
Gene ID: HRGMv2_2743_8_29
Type: TC
Location: 29571 - 30680 (-)
Gene ID: HRGMv2_2743_8_30
Type: TC
Location: 30774 - 31832 (-)
Gene ID: HRGMv2_2743_8_31
Type: STP
Location: 32058 - 33392 (-)
Gene ID: HRGMv2_2743_8_32
Type: TF
Location: 33389 - 34072 (-)
Gene ID: HRGMv2_2743_8_33
Type: TC
Location: 34234 - 36000 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2743_8_30 vegetarian > vegan 1.07625 0.00360
HRGMv2_2743_8_31 vegetarian > vegan 1.23319 0.00360

🧭 Explore Read Mapping of CGC

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