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Cluster: HRGMv2_2743_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2743_14 HRGMv2_2743_14_31 35529 36560 + 3.A.1.14.21
TC HRGMv2_2743_14 HRGMv2_2743_14_32 36557 37321 + 3.A.1.14.1
TC HRGMv2_2743_14 HRGMv2_2743_14_33 37766 38656 + 3.A.1.3.20
TC HRGMv2_2743_14 HRGMv2_2743_14_34 38684 39454 + 3.A.1.3.20
TC HRGMv2_2743_14 HRGMv2_2743_14_35 39458 40198 + 3.A.1.3.20
TF HRGMv2_2743_14 HRGMv2_2743_14_36 40314 40994 + Trans_reg_C
STP HRGMv2_2743_14 HRGMv2_2743_14_37 40991 41980 + HATPase_c
TC HRGMv2_2743_14 HRGMv2_2743_14_38 42088 42852 + 3.A.1.134.4
TC HRGMv2_2743_14 HRGMv2_2743_14_39 42849 44876 + 3.A.1.134.9
CAZyme HRGMv2_2743_14 HRGMv2_2743_14_40 45002 46267 + GT2
Gene ID: HRGMv2_2743_14_31
Type: TC
Location: 35529 - 36560 (+)
Gene ID: HRGMv2_2743_14_32
Type: TC
Location: 36557 - 37321 (+)
Gene ID: HRGMv2_2743_14_33
Type: TC
Location: 37766 - 38656 (+)
Gene ID: HRGMv2_2743_14_34
Type: TC
Location: 38684 - 39454 (+)
Gene ID: HRGMv2_2743_14_35
Type: TC
Location: 39458 - 40198 (+)
Gene ID: HRGMv2_2743_14_36
Type: TF
Location: 40314 - 40994 (+)
Gene ID: HRGMv2_2743_14_37
Type: STP
Location: 40991 - 41980 (+)
Gene ID: HRGMv2_2743_14_38
Type: TC
Location: 42088 - 42852 (+)
Gene ID: HRGMv2_2743_14_39
Type: TC
Location: 42849 - 44876 (+)
Gene ID: HRGMv2_2743_14_40
Type: CAZyme
Location: 45002 - 46267 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2743_14_35 vegan > omnivore 1.27410 0.01287
HRGMv2_2743_14_37 vegetarian > omnivore 1.04499 0.00565
HRGMv2_2743_14_40 vegetarian > vegan 1.26511 0.00360

🧭 Explore Read Mapping of CGC

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