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Cluster: HRGMv2_2735_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2735_10 HRGMv2_2735_10_1 303 2156 + 3.A.11.1.3
pfam HRGMv2_2735_10 HRGMv2_2735_10_2 2153 3172 + DNA_pol3_delta_C
pfam HRGMv2_2735_10 HRGMv2_2735_10_3 3169 3777 + Toprim | DUF4093
TC HRGMv2_2735_10 HRGMv2_2735_10_4 3835 4611 - 2.A.5.5.2
pfam HRGMv2_2735_10 HRGMv2_2735_10_5 5009 5536 + NTP_transf_5
pfam HRGMv2_2735_10 HRGMv2_2735_10_6 5511 6191 + NTP_transf_5
TC HRGMv2_2735_10 HRGMv2_2735_10_7 6553 8424 + 9.B.18.2.1
pfam HRGMv2_2735_10 HRGMv2_2735_10_8 8534 8770 + Glyco_trans_4_2
CAZyme HRGMv2_2735_10 HRGMv2_2735_10_9 8806 9696 + GT4
Gene ID: HRGMv2_2735_10_1
Type: TC
Location: 303 - 2156 (+)
Gene ID: HRGMv2_2735_10_2
Type: pfam
Location: 2153 - 3172 (+)
Gene ID: HRGMv2_2735_10_3
Type: pfam
Location: 3169 - 3777 (+)
Gene ID: HRGMv2_2735_10_4
Type: TC
Location: 3835 - 4611 (-)
Gene ID: HRGMv2_2735_10_5
Type: pfam
Location: 5009 - 5536 (+)
Gene ID: HRGMv2_2735_10_6
Type: pfam
Location: 5511 - 6191 (+)
Gene ID: HRGMv2_2735_10_7
Type: TC
Location: 6553 - 8424 (+)
Gene ID: HRGMv2_2735_10_8
Type: pfam
Location: 8534 - 8770 (+)
Gene ID: HRGMv2_2735_10_9
Type: CAZyme
Location: 8806 - 9696 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
SFJ001
→
Species
SFJ001 sp004555865

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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