Cluster: HRGMv2_2735_CGC5
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 11
- Substrate:
- Genome ID: HRGMv2_2735
- CGC Family ID: CGCFAM_00073
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2735_7 | HRGMv2_2735_7_8 | 8148 | 9125 | - | GT100 |
| TC | HRGMv2_2735_7 | HRGMv2_2735_7_9 | 9130 | 10422 | - | 3.A.1.103.5 |
| TC | HRGMv2_2735_7 | HRGMv2_2735_7_10 | 10437 | 11300 | - | 3.A.1.103.5 |
| CAZyme | HRGMv2_2735_7 | HRGMv2_2735_7_11 | 11482 | 12561 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_2735_7 | HRGMv2_2735_7_12 | 12617 | 13588 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2735_7 | HRGMv2_2735_7_13 | 13575 | 14273 | - | WbqC |
| CAZyme | HRGMv2_2735_7 | HRGMv2_2735_7_14 | 14348 | 15424 | - | GT2 |
| STP | HRGMv2_2735_7 | HRGMv2_2735_7_15 | 15433 | 16560 | - | Aminotran_1_2 |
| CAZyme | HRGMv2_2735_7 | HRGMv2_2735_7_16 | 16573 | 17808 | - | GT4 |
| CAZyme | HRGMv2_2735_7 | HRGMv2_2735_7_17 | 17805 | 18779 | - | GT2 |
| CAZyme | HRGMv2_2735_7 | HRGMv2_2735_7_18 | 18813 | 19829 | - | GT2 |
| CAZyme | HRGMv2_2735_7 | HRGMv2_2735_7_19 | 19852 | 20877 | - | GT2 |
| CAZyme | HRGMv2_2735_7 | HRGMv2_2735_7_20 | 20870 | 21829 | - | GT2 |
| CAZyme | HRGMv2_2735_7 | HRGMv2_2735_7_21 | 21877 | 23139 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_2735_7 | HRGMv2_2735_7_22 | 23176 | 24423 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2735_7 | HRGMv2_2735_7_23 | 24561 | 25562 | - | GT2 |
| CAZyme | HRGMv2_2735_7 | HRGMv2_2735_7_24 | 25595 | 26701 | - | GT4 |
Gene ID: HRGMv2_2735_7_8
Type: CAZyme
Location: 8148 - 9125 (-)
Type: CAZyme
Location: 8148 - 9125 (-)
Gene ID: HRGMv2_2735_7_9
Type: TC
Location: 9130 - 10422 (-)
Type: TC
Location: 9130 - 10422 (-)
Gene ID: HRGMv2_2735_7_10
Type: TC
Location: 10437 - 11300 (-)
Type: TC
Location: 10437 - 11300 (-)
Gene ID: HRGMv2_2735_7_11
Type: CAZyme
Location: 11482 - 12561 (-)
Type: CAZyme
Location: 11482 - 12561 (-)
Gene ID: HRGMv2_2735_7_12
Type:
Location: 12617 - 13588 (-)
Type:
Location: 12617 - 13588 (-)
Gene ID: HRGMv2_2735_7_13
Type: pfam
Location: 13575 - 14273 (-)
Type: pfam
Location: 13575 - 14273 (-)
Gene ID: HRGMv2_2735_7_14
Type: CAZyme
Location: 14348 - 15424 (-)
Type: CAZyme
Location: 14348 - 15424 (-)
Gene ID: HRGMv2_2735_7_15
Type: STP
Location: 15433 - 16560 (-)
Type: STP
Location: 15433 - 16560 (-)
Gene ID: HRGMv2_2735_7_16
Type: CAZyme
Location: 16573 - 17808 (-)
Type: CAZyme
Location: 16573 - 17808 (-)
Gene ID: HRGMv2_2735_7_17
Type: CAZyme
Location: 17805 - 18779 (-)
Type: CAZyme
Location: 17805 - 18779 (-)
Gene ID: HRGMv2_2735_7_18
Type: CAZyme
Location: 18813 - 19829 (-)
Type: CAZyme
Location: 18813 - 19829 (-)
Gene ID: HRGMv2_2735_7_19
Type: CAZyme
Location: 19852 - 20877 (-)
Type: CAZyme
Location: 19852 - 20877 (-)
Gene ID: HRGMv2_2735_7_20
Type: CAZyme
Location: 20870 - 21829 (-)
Type: CAZyme
Location: 20870 - 21829 (-)
Gene ID: HRGMv2_2735_7_21
Type: CAZyme
Location: 21877 - 23139 (-)
Type: CAZyme
Location: 21877 - 23139 (-)
Gene ID: HRGMv2_2735_7_22
Type:
Location: 23176 - 24423 (-)
Type:
Location: 23176 - 24423 (-)
Gene ID: HRGMv2_2735_7_23
Type: CAZyme
Location: 24561 - 25562 (-)
Type: CAZyme
Location: 24561 - 25562 (-)
Gene ID: HRGMv2_2735_7_24
Type: CAZyme
Location: 25595 - 26701 (-)
Type: CAZyme
Location: 25595 - 26701 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
SFJ001
Species
SFJ001 sp004555865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2735_7_10 | vegan > omnivore | 1.03107 | 0.02695 |