Cluster: HRGMv2_2735_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2735
- CGC Family ID: CGCFAM_00173
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2735_4 | HRGMv2_2735_4_1 | 3 | 461 | - | 3.D.6.1.2 |
| TC | HRGMv2_2735_4 | HRGMv2_2735_4_2 | 465 | 1031 | - | 3.D.6.1.3 |
| TC | HRGMv2_2735_4 | HRGMv2_2735_4_3 | 1028 | 1972 | - | 3.D.6.1.2 |
| TC | HRGMv2_2735_4 | HRGMv2_2735_4_4 | 1972 | 3339 | - | 3.D.6.1.2 |
| NULL(UNKNOWN) | HRGMv2_2735_4 | HRGMv2_2735_4_5 | 3783 | 3914 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2735_4 | HRGMv2_2735_4_6 | 4089 | 4958 | - | GT4 |
Gene ID: HRGMv2_2735_4_1
Type: TC
Location: 3 - 461 (-)
Type: TC
Location: 3 - 461 (-)
Gene ID: HRGMv2_2735_4_2
Type: TC
Location: 465 - 1031 (-)
Type: TC
Location: 465 - 1031 (-)
Gene ID: HRGMv2_2735_4_3
Type: TC
Location: 1028 - 1972 (-)
Type: TC
Location: 1028 - 1972 (-)
Gene ID: HRGMv2_2735_4_4
Type: TC
Location: 1972 - 3339 (-)
Type: TC
Location: 1972 - 3339 (-)
Gene ID: HRGMv2_2735_4_5
Type:
Location: 3783 - 3914 (+)
Type:
Location: 3783 - 3914 (+)
Gene ID: HRGMv2_2735_4_6
Type: CAZyme
Location: 4089 - 4958 (-)
Type: CAZyme
Location: 4089 - 4958 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
SFJ001
Species
SFJ001 sp004555865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.